Summary of 139-Kishimoto-TracheaDev
Title
Image data of trachea and esophagus formation in the mouse embryo
Kind
Image data
based on Experiment
Number of Datasets
85
( Image datasets: 85,
Quantitative data datasets: 0 )
Size of Datasets
5.3 GB
( Image datasets: 5.3 GB,
Quantitative data datasets: 0 bytes )
Biological Process (BP)
branching morphogenesis of an epithelial tube
Cellular Component (CC)
nucleus, cytoskeleton
Biological Imaging Method
scanning electron microscopy, time lapse microscopy, confocal microscopy, multi-photon microscopy
X scale
0.415 micrometer/pixel, 0.3275111 micrometer/pixel, 1.3284 micrometer/pixel, 0.3321063 micrometer/pixel, 2.6607 micrometer/pixel, 0.3322259 micrometer/pixel, 3.1746 micrometer/pixel, 7.8948 micrometer/pixel, 9.901 micrometer/pixel, 3.2051 micrometer/pixel, 0.5271531 micrometer/pixel, 0.2635765 micrometer/pixel, 10.0 micrometer/pixel, 13.5026 micrometer/pixel, NA, 5.0125 micrometer/pixel, 0.3321064 micrometer/pixel, 0.8302658 micrometer/pixel, 3.1646 micrometer/pixel, 0.3333333 micrometer/pixel, 4.0323 micrometer/pixel, 0.6642131 micrometer/pixel, 6.3573 micrometer/pixel, 0.4385965 micrometer/pixel, 0.319149 micrometer/pixel, 0.326087 micrometer/pixel, 2.6569 micrometer/pixel
Y scale
0.415 micrometer/pixel, 0.3275111 micrometer/pixel, 1.3284 micrometer/pixel, 0.3321063 micrometer/pixel, 2.6607 micrometer/pixel, 0.3322259 micrometer/pixel, 3.1746 micrometer/pixel, 7.8948 micrometer/pixel, 9.901 micrometer/pixel, 3.2051 micrometer/pixel, 0.5271531 micrometer/pixel, 0.2635765 micrometer/pixel, 10.0 micrometer/pixel, 13.5026 micrometer/pixel, NA, 5.0125 micrometer/pixel, 0.3321064 micrometer/pixel, 0.8302658 micrometer/pixel, 3.1646 micrometer/pixel, 0.3333333 micrometer/pixel, 4.0323 micrometer/pixel, 0.6642131 micrometer/pixel, 6.3573 micrometer/pixel, 0.4385965 micrometer/pixel, 0.319149 micrometer/pixel, 0.326087 micrometer/pixel, 2.6569 micrometer/pixel
Z scale
1 micrometer/pixel, 3.4529906 micrometer/pixel, NA, 2 micrometer/slice, 1.2895111 micrometer/pixel, 1 micrometer/slice
T scale
1 hour per time interval, NA
Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Related paper(s)
Keishi Kishimoto, Masaru Tamura, Michiru Nishita, Yasuhiro Minami, Akira Yamaoka, Takaya Abe, Mayo Shigeta, Mitsuru Morimoto (2018) Synchronized mesenchymal cell polarization and differentiation shape the formation of the murine trachea and esophagus., Nature communications, Volume 9, Number 1, pp. 2816
Published in 2018 Jul 19
(Electronic publication in July 19, 2018, midnight )
(Abstract) Tube morphogenesis is essential for internal-organ development, yet the mechanisms regulating tube shape remain unknown. Here, we show that different mechanisms regulate the length and diameter of the murine trachea. First, we found that trachea development progresses via sequential elongation and expansion processes. This starts with a synchronized radial polarization of smooth muscle (SM) progenitor cells with inward Golgi-apparatus displacement regulates tube elongation, controlled by mesenchymal Wnt5a-Ror2 signaling. This radial polarization directs SM progenitor cell migration toward the epithelium, and the resulting subepithelial morphogenesis supports tube elongation to the anteroposterior axis. This radial polarization also regulates esophageal elongation. Subsequently, cartilage development helps expand the tube diameter, which drives epithelial-cell reshaping to determine the optimal lumen shape for efficient respiration. These findings suggest a strategy in which straight-organ tubulogenesis is driven by subepithelial cell polarization and ring cartilage development.
(MeSH Terms)
Contact
Mitsuru Morimoto
, RIKEN
, Center for Biosystems Dynamics Research
, Laboratory for Lung Development
SSBD:OMERO.gallery Project
SSBD:OMERO Project
Dataset List of 139-Kishimoto-TracheaDev
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
Download Images
Dataset Kind
Image data
Dataset Size
237.1 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (105.1 KB)
Dataset Kind
Image data
Dataset Size
227.0 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (137.5 KB)
Dataset Kind
Image data
Dataset Size
541.2 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (359.4 KB)
Dataset Kind
Image data
Dataset Size
600.8 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (277.4 KB)
Dataset Kind
Image data
Dataset Size
391.3 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (222.3 KB)
Dataset Kind
Image data
Dataset Size
323.0 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (203.2 KB)
Dataset Kind
Image data
Dataset Size
292.1 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (153.1 KB)
Dataset Kind
Image data
Dataset Size
236.5 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (185.0 KB)
Dataset Kind
Image data
Dataset Size
245.7 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (154.5 KB)
Dataset Kind
Image data
Dataset Size
55.0 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (34.9 KB)
Dataset Kind
Image data
Dataset Size
82.7 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (51.3 KB)
Dataset Kind
Image data
Dataset Size
728.1 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (204.6 KB)
Dataset Kind
Image data
Dataset Size
728.1 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (194.3 KB)
Dataset Kind
Image data
Dataset Size
802.8 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (144.9 KB)
Dataset Kind
Image data
Dataset Size
802.8 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (124.4 KB)
Dataset Kind
Image data
Dataset Size
1.6 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (402.5 KB)
Dataset Kind
Image data
Dataset Size
1.6 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (506.7 KB)
Dataset Kind
Image data
Dataset Size
298.2 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (164.7 KB)
Dataset Kind
Image data
Dataset Size
298.2 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (129.9 KB)
Dataset Kind
Image data
Dataset Size
600.8 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (355.4 MB)
Dataset Kind
Image data
Dataset Size
600.8 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (412.9 MB)
Dataset Kind
Image data
Dataset Size
760.3 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (631.3 MB)
Dataset Kind
Image data
Dataset Size
892.3 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (780.8 MB)
Dataset Kind
Image data
Dataset Size
384.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (345.3 MB)
Dataset Kind
Image data
Dataset Size
568.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (505.4 MB)
Dataset Kind
Image data
Dataset Size
1.1 GB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (965.0 MB)
Dataset Kind
Image data
Dataset Size
376.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (319.4 MB)
Dataset Kind
Image data
Dataset Size
157.4 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (107.3 KB)
Dataset Kind
Image data
Dataset Size
324.2 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (196.9 KB)
Dataset Kind
Image data
Dataset Size
480.9 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (168.8 KB)
Dataset Kind
Image data
Dataset Size
614.4 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (180.6 KB)
Dataset Kind
Image data
Dataset Size
1.4 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (373.4 KB)
Dataset Kind
Image data
Dataset Size
4.5 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (2.4 MB)
Dataset Kind
Image data
Dataset Size
5.1 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (2.3 MB)
Dataset Kind
Image data
Dataset Size
8.0 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (3.3 MB)
Dataset Kind
Image data
Dataset Size
12.5 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (4.9 MB)
Dataset Kind
Image data
Dataset Size
9.6 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (1.5 MB)
Dataset Kind
Image data
Dataset Size
14.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (4.0 MB)
Dataset Kind
Image data
Dataset Size
20.3 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (4.7 MB)
Dataset Kind
Image data
Dataset Size
15.3 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (2.0 MB)
Dataset Kind
Image data
Dataset Size
496.8 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (294.3 KB)
Dataset Kind
Image data
Dataset Size
522.6 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (352.7 KB)
Dataset Kind
Image data
Dataset Size
144.2 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (83.8 KB)
Dataset Kind
Image data
Dataset Size
120.2 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (79.7 KB)
Dataset Kind
Image data
Dataset Size
220.1 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (143.5 KB)
Dataset Kind
Image data
Dataset Size
213.9 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (148.4 KB)
Dataset Kind
Image data
Dataset Size
371.7 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (169.4 KB)
Dataset Kind
Image data
Dataset Size
365.6 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (201.2 KB)
Dataset Kind
Image data
Dataset Size
454.3 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (121.3 KB)
Dataset Kind
Image data
Dataset Size
448.2 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (141.5 KB)
Dataset Kind
Image data
Dataset Size
126.2 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (85.1 KB)
Dataset Kind
Image data
Dataset Size
120.2 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (82.3 KB)
Dataset Kind
Image data
Dataset Size
220.0 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (151.4 KB)
Dataset Kind
Image data
Dataset Size
213.9 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (147.1 KB)
Dataset Kind
Image data
Dataset Size
371.7 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (144.6 KB)
Dataset Kind
Image data
Dataset Size
365.7 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (153.5 KB)
Dataset Kind
Image data
Dataset Size
317.9 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (110.9 KB)
Dataset Kind
Image data
Dataset Size
311.9 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (104.3 KB)
Dataset Kind
Image data
Dataset Size
642.9 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (238.5 KB)
Dataset Kind
Image data
Dataset Size
722.4 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (287.3 KB)
Dataset Kind
Image data
Dataset Size
585.1 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (259.3 KB)
Dataset Kind
Image data
Dataset Size
47.7 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (28.5 KB)
Dataset Kind
Image data
Dataset Size
47.7 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (28.9 KB)
Dataset Kind
Image data
Dataset Size
41.7 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (27.7 KB)
Dataset Kind
Image data
Dataset Size
41.6 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (24.6 KB)
Dataset Kind
Image data
Dataset Size
41.7 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (24.8 KB)
Dataset Kind
Image data
Dataset Size
41.7 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (23.7 KB)
Dataset Kind
Image data
Dataset Size
41.6 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (24.0 KB)
Dataset Kind
Image data
Dataset Size
41.6 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (25.6 KB)
Dataset Kind
Image data
Dataset Size
41.7 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (24.9 KB)
Dataset Kind
Image data
Dataset Size
41.7 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (25.3 KB)
Dataset Kind
Image data
Dataset Size
41.7 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (24.7 KB)
Dataset Kind
Image data
Dataset Size
41.6 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (24.0 KB)
Dataset Kind
Image data
Dataset Size
47.7 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (30.1 KB)
Dataset Kind
Image data
Dataset Size
192.3 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (104.3 KB)
Dataset Kind
Image data
Dataset Size
41.7 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (24.6 KB)
Dataset Kind
Image data
Dataset Size
41.7 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (20.9 KB)
Dataset Kind
Image data
Dataset Size
41.6 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (27.2 KB)
Dataset Kind
Image data
Dataset Size
192.3 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (119.1 KB)
Dataset Kind
Image data
Dataset Size
41.7 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (23.7 KB)
Dataset Kind
Image data
Dataset Size
41.7 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (21.8 KB)
Dataset Kind
Image data
Dataset Size
24.6 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (25.0 KB)
Dataset Kind
Image data
Dataset Size
192.3 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (105.8 KB)
Dataset Kind
Image data
Dataset Size
41.7 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (17.0 KB)
Dataset Kind
Image data
Dataset Size
41.7 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (21.7 KB)