Summary of 139-Kishimoto-TracheaDev


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Title
Image data of trachea and esophagus formation in the mouse embryo
Description
-
Release date
2024-11-25
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
85 ( Image datasets: 85, Quantitative data datasets: 0 )
Size of Datasets
5.3 GB ( Image datasets: 5.3 GB, Quantitative data datasets: 0 bytes )

Organism(s)
Mus musculus

Datatype
-
Molecular Function (MF)
Biological Process (BP)
branching morphogenesis of an epithelial tube
Cellular Component (CC)
cytoskeleton, nucleus
Biological Imaging Method
confocal microscopy, multi-photon microscopy, scanning electron microscopy, time lapse microscopy
X scale
7.8948 micrometer/pixel, 1.3284 micrometer/pixel, 2.6607 micrometer/pixel, 0.319149 micrometer/pixel, 0.5271531 micrometer/pixel, 4.0323 micrometer/pixel, 0.8302658 micrometer/pixel, 9.901 micrometer/pixel, NA, 13.5026 micrometer/pixel, 0.2635765 micrometer/pixel, 0.3275111 micrometer/pixel, 3.1646 micrometer/pixel, 0.4385965 micrometer/pixel, 0.415 micrometer/pixel, 0.3333333 micrometer/pixel, 3.1746 micrometer/pixel, 10.0 micrometer/pixel, 0.3321064 micrometer/pixel, 0.3321063 micrometer/pixel, 0.6642131 micrometer/pixel, 0.326087 micrometer/pixel, 0.3322259 micrometer/pixel, 6.3573 micrometer/pixel, 5.0125 micrometer/pixel, 3.2051 micrometer/pixel, 2.6569 micrometer/pixel
Y scale
7.8948 micrometer/pixel, 1.3284 micrometer/pixel, 2.6607 micrometer/pixel, 0.319149 micrometer/pixel, 0.5271531 micrometer/pixel, 4.0323 micrometer/pixel, 0.8302658 micrometer/pixel, 9.901 micrometer/pixel, NA, 13.5026 micrometer/pixel, 0.2635765 micrometer/pixel, 0.3275111 micrometer/pixel, 3.1646 micrometer/pixel, 0.4385965 micrometer/pixel, 0.415 micrometer/pixel, 0.3333333 micrometer/pixel, 3.1746 micrometer/pixel, 10.0 micrometer/pixel, 0.3321064 micrometer/pixel, 0.3321063 micrometer/pixel, 0.6642131 micrometer/pixel, 0.326087 micrometer/pixel, 0.3322259 micrometer/pixel, 6.3573 micrometer/pixel, 5.0125 micrometer/pixel, 3.2051 micrometer/pixel, 2.6569 micrometer/pixel
Z scale
1 micrometer/slice, 1.2895111 micrometer/pixel, 2 micrometer/slice, 3.4529906 micrometer/pixel, 1 micrometer/pixel, NA
T scale
NA, 1 hour per time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Keishi Kishimoto, Masaru Tamura, Michiru Nishita, Yasuhiro Minami, Akira Yamaoka, Takaya Abe, Mayo Shigeta, Mitsuru Morimoto (2018) Synchronized mesenchymal cell polarization and differentiation shape the formation of the murine trachea and esophagus., Nature communications, Volume 9, Number 1, pp. 2816

Published in 2018 Jul 19 (Electronic publication in July 19, 2018, midnight )

(Abstract) Tube morphogenesis is essential for internal-organ development, yet the mechanisms regulating tube shape remain unknown. Here, we show that different mechanisms regulate the length and diameter of the murine trachea. First, we found that trachea development progresses via sequential elongation and expansion processes. This starts with a synchronized radial polarization of smooth muscle (SM) progenitor cells with inward Golgi-apparatus displacement regulates tube elongation, controlled by mesenchymal Wnt5a-Ror2 signaling. This radial polarization directs SM progenitor cell migration toward the epithelium, and the resulting subepithelial morphogenesis supports tube elongation to the anteroposterior axis. This radial polarization also regulates esophageal elongation. Subsequently, cartilage development helps expand the tube diameter, which drives epithelial-cell reshaping to determine the optimal lumen shape for efficient respiration. These findings suggest a strategy in which straight-organ tubulogenesis is driven by subepithelial cell polarization and ring cartilage development.
(MeSH Terms)

Contact
Mitsuru Morimoto , RIKEN , Center for Biosystems Dynamics Research , Laboratory for Lung Development
Contributors

Dataset List of 139-Kishimoto-TracheaDev

Thumbnail
#
Dataset ID
Kind
Size
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Thumbnail Thumbnail for dataset figure1B_trachea_E10.5
# 11593
Dataset Kind Image data
Dataset Size 237.1 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset figure1B_trachea_E11.5
# 11594
Dataset Kind Image data
Dataset Size 227.0 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset figure1B_trachea_E12.5
# 11595
Dataset Kind Image data
Dataset Size 541.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset figure1B_trachea_E13.5
# 11596
Dataset Kind Image data
Dataset Size 600.8 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset figure1B_trachea_E14.5
# 11597
Dataset Kind Image data
Dataset Size 391.3 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset figure1B_trachea_E15.5
# 11598
Dataset Kind Image data
Dataset Size 323.0 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset figure1B_trachea_E16.5
# 11599
Dataset Kind Image data
Dataset Size 292.1 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset figure1B_trachea_E17.5
# 11600
Dataset Kind Image data
Dataset Size 236.5 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset figure1B_trachea_E18.5
# 11601
Dataset Kind Image data
Dataset Size 245.7 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset figure1J_BrDU_trachea_E14.5
# 11602
Dataset Kind Image data
Dataset Size 55.0 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset figure1J_BrDU_trachea_E16.5
# 11603
Dataset Kind Image data
Dataset Size 82.7 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure3A_E10.5_KO
# 11604
Datast ID Figure3A_E10.5_KO
Dataset Kind Image data
Dataset Size 728.1 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure3A_E10.5_WT
# 11605
Datast ID Figure3A_E10.5_WT
Dataset Kind Image data
Dataset Size 728.1 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure3A_E11.5_KO
# 11606
Datast ID Figure3A_E11.5_KO
Dataset Kind Image data
Dataset Size 802.8 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure3A_E11.5_WT
# 11607
Datast ID Figure3A_E11.5_WT
Dataset Kind Image data
Dataset Size 802.8 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure3A_E12.5_KO
# 11608
Datast ID Figure3A_E12.5_KO
Dataset Kind Image data
Dataset Size 1.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure3A_E12.5_WT
# 11609
Datast ID Figure3A_E12.5_WT
Dataset Kind Image data
Dataset Size 1.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure3A_E18.5_KO
# 11610
Datast ID Figure3A_E18.5_KO
Dataset Kind Image data
Dataset Size 298.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure3A_E18.5_WT
# 11611
Datast ID Figure3A_E18.5_WT
Dataset Kind Image data
Dataset Size 298.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure4H_Wnt5a_KO
# 11612
Datast ID Figure4H_Wnt5a_KO
Dataset Kind Image data
Dataset Size 600.8 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure4H_Wnt5a_WT
# 11613
Datast ID Figure4H_Wnt5a_WT
Dataset Kind Image data
Dataset Size 600.8 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5I_wnt5a_WT_anterior
# 11614
Dataset Kind Image data
Dataset Size 760.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5I_wnt5a_WT_Gut1
# 11615
Dataset Kind Image data
Dataset Size 892.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5I_wnt5a_WT_stomach
# 11616
Dataset Kind Image data
Dataset Size 384.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5J_wnt5a_KO_anterior
# 11617
Dataset Kind Image data
Dataset Size 568.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5J_wnt5a_KO_Gut1
# 11618
Dataset Kind Image data
Dataset Size 1.1 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5J_wnt5a_KO_stomach
# 11619
Dataset Kind Image data
Dataset Size 376.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1A_Brdu_E12.5
# 11620
Dataset Kind Image data
Dataset Size 157.4 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1A_Brdu_E14.5
# 11621
Dataset Kind Image data
Dataset Size 324.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1A_Brdu_E16.5
# 11622
Dataset Kind Image data
Dataset Size 480.9 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1A_Brdu_E18.5
# 11623
Dataset Kind Image data
Dataset Size 614.4 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1A_Brdu_P10
# 11624
Datast ID FigureS1A_Brdu_P10
Dataset Kind Image data
Dataset Size 1.4 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1B_pHH3_E12.5
# 11625
Dataset Kind Image data
Dataset Size 4.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1B_pHH3_E13.5
# 11626
Dataset Kind Image data
Dataset Size 5.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1B_pHH3_E14.5
# 11627
Dataset Kind Image data
Dataset Size 8.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1B_pHH3_E15.0
# 11628
Dataset Kind Image data
Dataset Size 12.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1B_pHH3_E15.5
# 11629
Dataset Kind Image data
Dataset Size 9.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1B_pHH3_E16.0
# 11630
Dataset Kind Image data
Dataset Size 14.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1B_pHH3_E16.5
# 11631
Dataset Kind Image data
Dataset Size 20.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1B_pHH3_E17.5
# 11632
Dataset Kind Image data
Dataset Size 15.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS4D_KO_cartilage
# 11633
Dataset Kind Image data
Dataset Size 496.8 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS4D_WT_cartilage
# 11634
Dataset Kind Image data
Dataset Size 522.6 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS12A_control_E12.5_Dorsal
# 11635
Dataset Kind Image data
Dataset Size 144.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS12A_control_E12.5_Ventral
# 11636
Dataset Kind Image data
Dataset Size 120.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS12A_control_E14.5_Dorsal
# 11637
Dataset Kind Image data
Dataset Size 220.1 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS12A_control_E14.5_Ventral
# 11638
Dataset Kind Image data
Dataset Size 213.9 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS12A_control_E16.5_Dorsal
# 11639
Dataset Kind Image data
Dataset Size 371.7 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS12A_control_E16.5_Ventral
# 11640
Dataset Kind Image data
Dataset Size 365.6 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS12A_control_E18.5_Dorsal
# 11641
Dataset Kind Image data
Dataset Size 454.3 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS12A_control_E18.5_Ventral
# 11642
Dataset Kind Image data
Dataset Size 448.2 KB
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SSBD:OMERO
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