Summary of 5-Keller-FishEmbryo

SSBD:database
SSBD:database URL
Title
-
Description
-
Relase date
2013-10-03
Updated date
2018-11-15
License
CC BY-NC-SA
Kind
Quantitative data based on Experiment
Number of Datasets
7 ( Image datasets: 0, Quantitative data datasets: 7 )
Size of Datasets
48.2 GB ( Image datasets: 0 bytes, Quantitative data datasets: 48.2 GB )

Organism(s)
D. rerio

Datatype
nuclear positions
Molecular Function (MF)
Biological Process (BP)
embryo development
Cellular Component (CC)
nucleus
Biological Imaging Method
-
XYZ Scale
XY: 1.0 micrometer/pixel, Z: 1.0 micrometer/frame
T scale
90 second for each time interval

Image Acquisition
Experiment type
TimeLapse
Microscope type
ConfocalMicroscope
Acquisition mode
Other
Contrast method
Other
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Philipp J Keller, Annette D Schmidt, Joachim Wittbrodt, Ernst H K Stelzer (2008) Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy., Science (New York, N.Y.), Volume 322, Number 5904, pp. 1065-9

Published in 2008 Nov 14 (Electronic publication in Oct. 9, 2008, midnight )

(Abstract) A long-standing goal of biology is to map the behavior of all cells during vertebrate embryogenesis. We developed digital scanned laser light sheet fluorescence microscopy and recorded nuclei localization and movement in entire wild-type and mutant zebrafish embryos over the first 24 hours of development. Multiview in vivo imaging at 1.5 billion voxels per minute provides "digital embryos," that is, comprehensive databases of cell positions, divisions, and migratory tracks. Our analysis of global cell division patterns reveals a maternally defined initial morphodynamic symmetry break, which identifies the embryonic body axis. We further derive a model of germ layer formation and show that the mesendoderm forms from one-third of the embryo's cells in a single event. Our digital embryos, with 55 million nucleus entries, are provided as a resource.
(MeSH Terms)

Contact
Philipp J. Keller , European Molecular Biology Laboratory , Cell Biology and Biophysics Unit
Contributors
Philipp J. Keller, Annette D. Schmidt, Joachim Wittbrodt, Ernst H.K. Stelzer


Dataset List of 5-Keller-FishEmbryo

#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
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# 477
Datast ID zebrafish_animal_a
Dataset Kind Quantitative data
Dataset Size 7.5 GB
4D view
SSBD:OMERO
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# 478
Datast ID zebrafish_animal_b
Dataset Kind Quantitative data
Dataset Size 9.2 GB
4D view
SSBD:OMERO
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# 479
Datast ID zebrafish_animal_c
Dataset Kind Quantitative data
Dataset Size 3.0 GB
4D view
SSBD:OMERO
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# 480
Datast ID zebrafish_dorsal
Dataset Kind Quantitative data
Dataset Size 4.9 GB
4D view
SSBD:OMERO
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# 481
Dataset Kind Quantitative data
Dataset Size 9.3 GB
4D view
SSBD:OMERO
Download BDML
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# 482
Dataset Kind Quantitative data
Dataset Size 8.3 GB
4D view
SSBD:OMERO
Download BDML
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# 483
Datast ID zebrafish_ventral
Dataset Kind Quantitative data
Dataset Size 6.0 GB
4D view
SSBD:OMERO
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