13-Watabe-MolDyn
Author reviewedProject name
13-Watabe-MolDyn
Release date
2016-01-18
Update date
2018-11-15
Pre-release URL
-
Project title
-
License
Method summary
See details in Watabe et al. (2015) PLoS One, 10(7): e0130089
PubMed URL
Kind
Image data
Quantitative data
Organism
Dictyostelium discoideum
(
NCBITaxon:44689
)
Rattus norvegicus
(
NCBITaxon:10116
)
Total
111 files / 173.2 GB
Image datasets
zipped 4 files / 493.8 KB, raw image 95 files / 487.6 KB, total 99 files / 981.4 KB
Quantitative datasets
zipped 4 files / 21.8 GB, raw bdml 8 files / 151.4 GB, total 12 files / 173.1 GB
Image datasets
2
Quantitative datasets
4
Strain
PC-12
Datatype
single molecule dynamics
Basedon
Experiment
Simulation
XYZ-scale
XY: 414.3 nanometer/pixel, Z: 0 micrometer/slice
XY: 1 micrometer, Z: 1 micrometer
XY: 207.16 nanometer/pixel, Z: 0 micrometer/slice
T-scale
1.206 second for each time interval
1.0 second for each time interval
0.001 second for each time interval
0.003 second for each time interval
1.10 microsecond for each time interval
0.1 second for each time interval
dblink
None
External links
None
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Biological Process
cellular protein localization
(
GO:0034613
)
Cellular Component
-
People
Contact
Koichi Takahashi
RIKEN
Quantitative Biology Center
Laboratory for Biochemical Simulation
6-2-3 Furuedai, Suita, Osaka 565-0874, Japan
Contributors
Masaki Watabe, Satya N. V. Arjunan, Seiya Fukushima, Kazunari Iwamoto, Jun Kozuka, Satomi Matsuoka, Yuki Shindo, Masahiro Ueda, Koichi Takahashi
OMERO.gallery
Dataset List
Thumbnail
Dataset
Organism
Kind / Links
Time-lapse laser-scanning confocal microscopy (LSCM) images of PTEN molecules in D. discoideum cell obtained from in vivo experiments
BDML file for quantitative information about PTEN dynamics obtained by a laser-scanning confocal microscopy (LSCM) simulation module
BDML file for quantitative information about particle dynamics obtained by a laser-scanning confocal microscopy (LSCM) simulation module
BDML file for quantitative information about particle dynamics obtained by a total internal reflection fluorescence microscopy (TIRFM) simulation module
Time-lapse laser-scanning confocal microscopy (LSCM) images of ERK molecules in PC-12 cell obtained from in vivo experiments
BDML file for quantitative information about ERK nuclear translocation dynamics obtained by a laser-scanning confocal microscopy (LSCM) simulation module