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SSBD:OMERO
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Usage
Dataset 13-Watabe-MolDyn/NA_TMR_LSCM_SIM
Author reviewed
SSBD:OMERO.gallery (Project)
SSBD:OMERO (Project)
BDML
4D Viewer
SSBD:downloads
Project name
13-Watabe-MolDyn
Release date
2016-01-18
Update date
2018-11-15
Pre-release URL
None
Project title
None
Contact name
Koichi Takahashi
Organization
RIKEN
Department
Quantitative Biology Center
Laboratory
Laboratory for Biochemical Simulation
Address
6-2-3 Furuedai, Suita, Osaka 565-0874, Japan
License
CC BY
Contributors
Masaki Watabe, Satya N. V. Arjunan, Seiya Fukushima, Kazunari Iwamoto, Jun Kozuka, Satomi Matsuoka, Yuki Shindo, Masahiro Ueda, Koichi Takahashi
Method summary
See details in Watabe et al. (2015) PLoS One, 10(7): e0130089
PubMed URL
https://www.ncbi.nlm.nih.gov/pubmed/26147508
File or Folder
NA_TMR_LSCM_SIM
Kind
Quantitative data
Title
BDML file for quantitative information about particle dynamics obtained by a laser-scanning confocal microscopy (LSCM) simulation module
Description
-
Organism
-
Strain
None
Datatype
single molecule dynamics
Basedon
Simulation
LocalID
NA_TMR_LSCM_SIM
XYZ-scale
XY: 1 micrometer, Z: 1 micrometer
T-scale
0.001 second for each time interval
dblink
None
External links
-
Source
None
BDML
http://ssbd.qbic.riken.jp/data/13-Watabe-MolDyn/bdml/NA_TMR_LSCM_SIM_bdml3.0.zip
PDPML
None
Experiment type
None
Microscope type
None
Acquisition mode
None
Contrast method
None
Microscope model
None
Detector model
None
Objective model
None
Filter set
None
Sample
-
Dye
-
Clearing
-
Note0
-
Biological Process
cellular protein localization (
GO:0034613
)
Cellular Component
-
Project gallery
https://ssbd.riken.jp/omero/gallery/show_project/2/
Project
https://ssbd.riken.jp/omero/webclient/?show=project-2
Documents
BDML file for quantitative information about ERK nuclear translocation dynamics obtained by the laser-scanning confocal microscopy (LSCM) simulation module
4D Viewer
https://ssbd.riken.jp/webbd5viewer/viewerBD5.html?project=13-Watabe-MolDyn&file=NA_TMR_LSCM_SIM_bd5
Sibling records
No sibling records.
downloads
https://ssbd.riken.jp/data/13-Watabe-MolDyn/