SSBD
:database
Share your data
SSBD:repository
SSBD:database
Resources
Resources in SSBD:database (metadata v3)
Resources in SSBD:database
Resources in SSBD:repository
SSBD:OMERO
SSBD:BFF
Tools
Ontology validator
Publications
About
About SSBD
Statistics
About us
News
Copyright
Usage
Dataset 13-Watabe-MolDyn/Rat_ERK_LSCM_SIM
Author reviewed
SSBD:OMERO.gallery (Project)
SSBD:OMERO (Project)
BDML
4D Viewer
SSBD:downloads
Project name
13-Watabe-MolDyn
Release date
2016-01-18
Update date
2018-11-15
Pre-release URL
None
Project title
None
Contact name
Koichi Takahashi
Organization
RIKEN
Department
Quantitative Biology Center
Laboratory
Laboratory for Biochemical Simulation
Address
6-2-3 Furuedai, Suita, Osaka 565-0874, Japan
License
CC BY
Contributors
Masaki Watabe, Satya N. V. Arjunan, Seiya Fukushima, Kazunari Iwamoto, Jun Kozuka, Satomi Matsuoka, Yuki Shindo, Masahiro Ueda, Koichi Takahashi
Method summary
See details in Watabe et al. (2015) PLoS One, 10(7): e0130089
PubMed URL
https://www.ncbi.nlm.nih.gov/pubmed/26147508
File or Folder
Rat_ERK_LSCM_SIM
Kind
Quantitative data
Title
BDML file for quantitative information about ERK nuclear translocation dynamics obtained by a laser-scanning confocal microscopy (LSCM) simulation module
Description
-
Organism
Rattus norvegicus
(
NCBITaxon:10116
)
Strain
PC-12
Datatype
single molecule dynamics
Basedon
Simulation
LocalID
Rat_ERK_LSCM_SIM
XYZ-scale
XY: 1 micrometer, Z: 1 micrometer
T-scale
0.1 second for each time interval
dblink
None
External links
-
Source
None
BDML
http://ssbd.qbic.riken.jp/data/13-Watabe-MolDyn/bdml/Rat_ERK_LSCM_SIM_bdml3.0.zip
PDPML
None
Experiment type
None
Microscope type
None
Acquisition mode
None
Contrast method
None
Microscope model
None
Detector model
None
Objective model
None
Filter set
None
Sample
-
Dye
-
Clearing
-
Note0
-
Biological Process
cellular protein localization (
GO:0034613
)
Cellular Component
-
Project gallery
https://ssbd.riken.jp/omero/gallery/show_project/2/
Project
https://ssbd.riken.jp/omero/webclient/?show=project-2
Documents
BDML file for quantitative information about ERK nuclear translocation dynamics obtained by the laser-scanning confocal microscopy (LSCM) simulation module
4D Viewer
https://ssbd.riken.jp/webbd5viewer/viewerBD5.html?project=13-Watabe-MolDyn&file=Rat_ERK_LSCM_SIM_bd5
Sibling records
No sibling records.
downloads
https://ssbd.riken.jp/data/13-Watabe-MolDyn/