SSBD:database

Dataset 13-Watabe-MolDyn/Rat_ERK_LSCM_SIM

Author reviewed
SSBD:OMERO.gallery (Project) SSBD:OMERO (Project) BDML 4D Viewer
SSBD:downloads
Project name
13-Watabe-MolDyn
Release date
2016-01-18
Update date
2018-11-15
Pre-release URL
None
Project title
None
Contact name
Koichi Takahashi
Organization
RIKEN
Department
Quantitative Biology Center
Laboratory
Laboratory for Biochemical Simulation
License
CC BY
Contributors
Masaki Watabe, Satya N. V. Arjunan, Seiya Fukushima, Kazunari Iwamoto, Jun Kozuka, Satomi Matsuoka, Yuki Shindo, Masahiro Ueda, Koichi Takahashi
Method summary
See details in Watabe et al. (2015) PLoS One, 10(7): e0130089
Paper(s)
File or Folder
Rat_ERK_LSCM_SIM
Kind
Quantitative data
Title
BDML file for quantitative information about ERK nuclear translocation dynamics obtained by a laser-scanning confocal microscopy (LSCM) simulation module
Description
-
Organism
Rattus norvegicus ( NCBITaxon:10116 )
Strain
PC-12
Datatype
single molecule dynamics
Basedon
Simulation
LocalID
Rat_ERK_LSCM_SIM
XYZ-scale
XY: 1 micrometer, Z: 1 micrometer
T-scale
0.1 second for each time interval
dblink
None
External links
-
Source
None
BDML
http://ssbd.qbic.riken.jp/data/13-Watabe-MolDyn/bdml/Rat_ERK_LSCM_SIM_bdml3.0.zip
PDPML
None
Experiment type
None
Microscope type
None
Acquisition mode
None
Contrast method
None
Microscope model
None
Detector model
None
Objective model
None
Filter set
None
Sample
-
Dye
-
Clearing
-
Biological Process
cellular protein localization ( GO:0034613 )
Cellular Component
-
Project gallery
https://ssbd.riken.jp/omero/gallery/show_project/2/
Project
https://ssbd.riken.jp/omero/webclient/?show=project-2
Documents
BDML file for quantitative information about ERK nuclear translocation dynamics obtained by the laser-scanning confocal microscopy (LSCM) simulation module
4D Viewer
https://ssbd.riken.jp/webbd5viewer/viewerBD5.html?project=13-Watabe-MolDyn&file=Rat_ERK_LSCM_SIM_bd5

Sibling records

No sibling records.
downloads
https://ssbd.riken.jp/data/13-Watabe-MolDyn/?dataset=Rat_ERK_LSCM_SIM