SSBD:database

Thumbnail for 87-CorneliaKoeverle-SpineDyn

Summary of 87-CorneliaKoeverle-SpineDyn

SSBD:database
87-CorneliaKoeverle-SpineDyn
SSBD:database URL
https://ssbd.riken.jp/database/87-CorneliaKoeverle-SpineDyn/
SSBD:repository
ssbd-repos-000087
SSBD:repository URL
https://ssbd.riken.jp/repository/87/
Title
Images and time-lapse images of spine formation in wild type and CaMKIIaKI hippocampal neurons.
Description
-
Release date
2018-11-14
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
32 ( Image datasets: 30, Quantitative data datasets: 2 )
Size of Datasets
204.9 MB ( Image datasets: 204.9 MB, Quantitative data datasets: 0 bytes )
Organism(s)
Mus musculus
Protein name(s)
Rap1
Protein tag(s)
DsRed2, PAGFP, RFP
Datatype
spine dynamics
Molecular Function (MF)
Biological Process (BP)
spine apparatus formation
Cellular Component (CC)
neuron spine, spine synapse
Biological Imaging Method
-
XYZ Scale
XY: 0.104 micrometer/pixel, Z: 0.700 micrometer/slice, XY: 0.072 micrometer/pixel, Z: 0.500 micrometer/slice, XY: 0.082 micrometer/pixel, Z: 0.500 micrometer/slice, XY: 0.0932 micrometer/pixel, Z: 0.400 micrometer/slice, XY: 0.155 micrometer/pixel, Z: 0.400 micrometer/slice
T scale
1 day for each time interval, 1800 second for each time interval, NA, 15 second for each time interval
Image Acquisition
Experiment type
TimeLapse
Microscope type
ConfocalMicroscope
Acquisition mode
LaserScanningConfocalMicroscopy
Contrast method
Fluorescence
Microscope model
Olympus FluoView FV1000, Olympus FluoView FV300
Detector model
-
Objective model
LUMPlanFL N X60 1.0 Water, PlanApo X60 1.10 Oil LSM (Olympus), LUMPlanFl/IR X60 0.9 Water
Filter set
-
Related paper(s)
Contact
Shigeo Okabe , University of Tokyo , Department of Cellular Neurobiology, Graduate School of Medicine
Contributors
Solveigh Cornelia Koeberle, Shinji Tanaka, Toshihiko Kuriu, Hirohide Iwasaki, Andreas Koeberle, Alexander Schulz, Dario-Lucas Helbing, Yoko Yamagata, Helen Morrison, Shigeo Okabe

Dataset List of 87-CorneliaKoeverle-SpineDyn

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#
Dataset ID
Kind
Size
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Thumbnail Thumbnail for dataset fig1a_KI_apical
# 4108
Datast ID fig1a_KI_apical
Dataset Kind Image data
Dataset Size 165.2 KB
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Thumbnail Thumbnail for dataset fig1a_KI_basal
# 4109
Datast ID fig1a_KI_basal
Dataset Kind Image data
Dataset Size 172.8 KB
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Thumbnail Thumbnail for dataset fig1a_KI_oblique
# 4110
Datast ID fig1a_KI_oblique
Dataset Kind Image data
Dataset Size 184.2 KB
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Thumbnail Thumbnail for dataset fig1a_WT_apical
# 4111
Datast ID fig1a_WT_apical
Dataset Kind Image data
Dataset Size 157.7 KB
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Thumbnail Thumbnail for dataset fig1a_WT_basal
# 4112
Datast ID fig1a_WT_basal
Dataset Kind Image data
Dataset Size 175.0 KB
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Thumbnail Thumbnail for dataset fig1a_WT_oblique
# 4113
Datast ID fig1a_WT_oblique
Dataset Kind Image data
Dataset Size 178.4 KB
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Thumbnail Thumbnail for dataset fig2ab_KI_day1
# 4114
Datast ID fig2ab_KI_day1
Dataset Kind Image data
Dataset Size 3.6 MB
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Thumbnail Thumbnail for dataset fig2ab_KI_day2
# 4115
Datast ID fig2ab_KI_day2
Dataset Kind Image data
Dataset Size 5.6 MB
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Thumbnail Thumbnail for dataset fig2ab_WT_day1
# 4116
Datast ID fig2ab_WT_day1
Dataset Kind Image data
Dataset Size 3.9 MB
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Thumbnail Thumbnail for dataset fig2ab_WT_day2
# 4117
Datast ID fig2ab_WT_day2
Dataset Kind Image data
Dataset Size 5.9 MB
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Thumbnail Thumbnail for dataset fig3a_KN92_19DIV_1
# 4118
Datast ID fig3a_KN92_19DIV_1
Dataset Kind Image data
Dataset Size 13.0 MB
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Thumbnail Thumbnail for dataset fig3a_KN92_19DIV_2
# 4119
Datast ID fig3a_KN92_19DIV_2
Dataset Kind Image data
Dataset Size 8.5 MB
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Thumbnail Thumbnail for dataset fig3a_KN92_20DIV
# 4120
Datast ID fig3a_KN92_20DIV
Dataset Kind Image data
Dataset Size 10.0 MB
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Thumbnail Thumbnail for dataset fig3a_KN93_19DIV_1
# 4121
Datast ID fig3a_KN93_19DIV_1
Dataset Kind Image data
Dataset Size 10.5 MB
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Thumbnail Thumbnail for dataset fig3a_KN93_19DIV_2
# 4122
Datast ID fig3a_KN93_19DIV_2
Dataset Kind Image data
Dataset Size 8.0 MB
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Thumbnail Thumbnail for dataset fig3a_KN93_20DIV
# 4123
Datast ID fig3a_KN93_20DIV
Dataset Kind Image data
Dataset Size 9.5 MB
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Thumbnail Thumbnail for dataset fig3c_CaMKlla_14DIV_1
# 4124
Datast ID fig3c_CaMKlla_14DIV_1
Dataset Kind Image data
Dataset Size 16.0 MB
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Thumbnail Thumbnail for dataset fig3c_CaMKlla_14DIV_2
# 4125
Datast ID fig3c_CaMKlla_14DIV_2
Dataset Kind Image data
Dataset Size 12.0 MB
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Thumbnail Thumbnail for dataset fig3c_CaMKlla_16DIV
# 4126
Datast ID fig3c_CaMKlla_16DIV
Dataset Kind Image data
Dataset Size 13.0 MB
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Thumbnail Thumbnail for dataset fig3c_K42R_14DIV_1
# 4127
Datast ID fig3c_K42R_14DIV_1
Dataset Kind Image data
Dataset Size 13.0 MB
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Thumbnail Thumbnail for dataset fig3c_K42R_14DIV_2
# 4128
Datast ID fig3c_K42R_14DIV_2
Dataset Kind Image data
Dataset Size 10.0 MB
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Thumbnail Thumbnail for dataset fig3c_K42R_16DIV
# 4129
Datast ID fig3c_K42R_16DIV
Dataset Kind Image data
Dataset Size 15.0 MB
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Thumbnail Thumbnail for dataset fig5a_control_1
# 4130
Datast ID fig5a_control_1
Dataset Kind Image data
Dataset Size 5.3 MB
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Thumbnail Thumbnail for dataset fig5a_control_2
# 4131
Datast ID fig5a_control_2
Dataset Kind Image data
Dataset Size 6.8 MB
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Thumbnail Thumbnail for dataset fig5a_control_3
# 4132
Datast ID fig5a_control_3
Dataset Kind Image data
Dataset Size 6.8 MB
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Thumbnail Thumbnail for dataset fig5a_KN93_1
# 4133
Datast ID fig5a_KN93_1
Dataset Kind Image data
Dataset Size 9.8 MB
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Thumbnail Thumbnail for dataset fig5a_KN93_2
# 4134
Datast ID fig5a_KN93_2
Dataset Kind Image data
Dataset Size 6.8 MB
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Thumbnail Thumbnail for dataset fig5a_KN93_3
# 4135
Datast ID fig5a_KN93_3
Dataset Kind Image data
Dataset Size 9.8 MB
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Thumbnail Thumbnail for dataset fig6c_KI
# 4136
Datast ID fig6c_KI
Dataset Kind Image data
Dataset Size 568.5 KB
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Thumbnail Thumbnail for dataset fig6c_WT
# 4137
Datast ID fig6c_WT
Dataset Kind Image data
Dataset Size 568.5 KB
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