Summary of 211-Hiroshima-EGFRTracking

SSBD:database
SSBD:database URL
Title
Single-molecule imaging and BDML file for quantitative information about trajectories of EGFR dynamics and activities in living CHO-K1 cells.
Description
-
Relase date
2022-03-31
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
12 ( Image datasets: 12, Quantitative data datasets: 0 )
Size of Datasets
31.3 GB ( Image datasets: 31.3 GB, Quantitative data datasets: 0 bytes )

Organism(s)
Cricetulus griseus
Cell lines(s)
CHO-K1
Protein name(s)
EGFR, GRB2
Protein tag(s)
GFP

Datatype
-
Molecular Function (MF)
epidermal growth factor receptor binding, epidermal growth factor-activated receptor activity
Biological Process (BP)
epidermal growth factor receptor signaling pathway
Cellular Component (CC)
NA, Grb2-EGFR complex
Biological Imaging Method
time lapse microscopy, evanescent wave microscopy
X scale
44 nanometer/pixel
Y scale
44 nanometer/pixel
Z scale
-
T scale
30.5 microsecond per time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Michio Hiroshima, Chan-Gi Pack, Kazunari Kaizu, Koichi Takahashi, Masahiro Ueda, Yasushi Sako (2018) Transient Acceleration of Epidermal Growth Factor Receptor Dynamics Produces Higher-Order Signaling Clusters., Journal of molecular biology, Volume 430, Number 9, pp. 1386-1401

Published in 2018 Apr 27 (Electronic publication in March 2, 2018, midnight )

(Abstract) Cell signaling depends on spatiotemporally regulated molecular interactions. Although the movements of signaling proteins have been analyzed with various technologies, how spatial dynamics influence the molecular interactions that transduce signals is unclear. Here, we developed a single-molecule method to analyze the spatiotemporal coupling between motility, clustering, and signaling. The analysis was performed with the epidermal growth factor receptor (EGFR), which triggers signaling through its dimerization and phosphorylation after association with EGF. Our results show that the few EGFRs isolated in membrane subdomains were released by an EGF-dependent increase in their diffusion area, facilitating molecular associations and producing immobile clusters. Using a two-color single-molecule analysis, we found that the EGF-induced state transition alters the properties of the immobile clusters, allowing them to interact for extended periods with the cytoplasmic protein, GRB2. Our study reveals a novel correlation between this molecular interaction and its mesoscale dynamics, providing the initial signaling node.
(MeSH Terms)

Contact
Yasushi Sako , RIKEN , Cellular Informatics Laboratory
Contributors
Michio Hiroshima


Dataset List of 211-Hiroshima-EGFRTracking

#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
Download Images
# 7535
Dataset Kind Image data
Dataset Size 201.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7536
Datast ID Fig2_EGF00nM
Dataset Kind Image data
Dataset Size 3.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7537
Dataset Kind Image data
Dataset Size 1.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7538
Datast ID Fig2_EGF00nM_cell1
Dataset Kind Image data
Dataset Size 1008.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7539
Datast ID Fig2_EGF00nM_cell3
Dataset Kind Image data
Dataset Size 1.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7540
Datast ID Fig2_EGF4nM_15s
Dataset Kind Image data
Dataset Size 1.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7541
Datast ID Fig2_EGF4nM_30s
Dataset Kind Image data
Dataset Size 1.8 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7542
Datast ID Fig2_EGF4nM_60s
Dataset Kind Image data
Dataset Size 1008.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7543
Datast ID Fig2_EGF30nM_60s
Dataset Kind Image data
Dataset Size 2.8 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7544
Dataset Kind Image data
Dataset Size 6.9 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7545
Dataset Kind Image data
Dataset Size 7.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7546
Dataset Kind Image data
Dataset Size 3.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data