Summary of 150-Abe-SomiteDev


SSBD:database
SSBD:database URL

SSBD:repository
SSBD:repository URL

Title
Immunostaining or timelapse images of observation of horizontal boundary cells (HBCs) at different somite stage in medaka embryo
Description
-
Release date
2020-12-23
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
18 ( Image datasets: 18, Quantitative data datasets: 0 )
Size of Datasets
145.4 MB ( Image datasets: 145.4 MB, Quantitative data datasets: 0 bytes )

Organism(s)
Oryzias
Strain(s)
Medaka: Tg(b-actin:DsRed, Medaka: Tg(eng2a:mCherry), Medaka:Tg(Zic1:GFP/Zic4:DsRed)
Gene symbol(s)
zic1
Protein name(s)
b-actin
Protein tag(s)
GFP
Reporter(s)
DsRed

Datatype
-
Molecular Function (MF)
somite development
Biological Process (BP)
somite development
Cellular Component (CC)
antibody, dendritic shaft
Biological Imaging Method
transmission electron microscopy, time lapse microscopy, confocal microscopy, antibody, fluorescence microscopy
X scale
0.3095876 micrometer/pixel, 0.6918882 micrometer/pixel, 0.8302658 micrometer/pixel, 0.4151329 micrometer/pixel, 0.0033333 inch/pixel, NA
Y scale
0.3095876 micrometer/pixel, 0.6918882 micrometer/pixel, 0.8302658 micrometer/pixel, 0.4151329 micrometer/pixel, 0.0033333 inch/pixel, NA
Z scale
1 micrometer/slice, 1.082 micrometer/pixel, 1 micrometer/pixel, 1.8594732 micrometer/slice, NA
T scale
-

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Kota Abe, Atsuko Shimada, Sayaka Tayama, Hotaka Nishikawa, Takuya Kaneko, Sachiko Tsuda, Akari Karaiwa, Takaaki Matsui, Tohru Ishitani, Hiroyuki Takeda (2019) Horizontal Boundary Cells, a Special Group of Somitic Cells, Play Crucial Roles in the Formation of Dorsoventral Compartments in Teleost Somite., Cell reports, Volume 27, Number 3, pp. 928-939.e4

Published in 2019 Apr 16

(Abstract) Establishment of robust gene expression boundary is crucial for creating elaborate morphology during development. However, mechanisms underlying boundary formation have been extensively studied only in a few model systems. We examined the establishment of zic1/zic4-expression boundary demarcating dorsoventral boundary of the entire trunk of medaka fish (Oryzias latipes) and identified a subgroup of dermomyotomal cells called horizontal boundary cells (HBCs) as crucial players for the boundary formation. Embryological and genetic analyses demonstrated that HBCs play crucial roles in the two major events of the process, i.e., refinement and maintenance. In the refinement, HBCs could serve as a chemical barrier against Wnts from the neural tube by expressing Hhip. At later stages, HBCs participate in the maintenance of the boundary by differentiating into the horizontal myoseptum physically inhibiting cell mixing across the boundary. These findings reveal the mechanisms underlying the dorsoventral boundary in the teleost trunk by specialized boundary cells.
(MeSH Terms)

Contact
Hiroyuki Takeda , Graduate School of Science, University of Tokyo , Department of Biological Sciences
Contributors
NA

Dataset List of 150-Abe-SomiteDev

Thumbnail
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure1B_somite_lateral
# 5013
Dataset Kind Image data
Dataset Size 26.4 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure1G_HBCs_zic1
# 5014
Datast ID Figure1G_HBCs_zic1
Dataset Kind Image data
Dataset Size 9.4 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure1HIJK_somite_optical
# 5015
Dataset Kind Image data
Dataset Size 32.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure2B_dorsal_16ss
# 5016
Dataset Kind Image data
Dataset Size 1.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure2C_dorsal_24ss
# 5017
Dataset Kind Image data
Dataset Size 1.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1B_Tg_zic1_0min
# 5018
Dataset Kind Image data
Dataset Size 3.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1B_Tg_zic1_160min
# 5019
Dataset Kind Image data
Dataset Size 3.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS1B_Tg_zic1_200min
# 5020
Dataset Kind Image data
Dataset Size 3.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2B_trunk_4days
# 5021
Dataset Kind Image data
Dataset Size 4.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2C_trunk_4days_magnified1
# 5022
Dataset Kind Image data
Dataset Size 4.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2C_trunk_4days_magnified2
# 5023
Dataset Kind Image data
Dataset Size 4.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2D_trunk_4days_magnified
# 5024
Dataset Kind Image data
Dataset Size 4.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS3K_control_5dpf
# 5025
Dataset Kind Image data
Dataset Size 7.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS3K_control_30ss
# 5026
Dataset Kind Image data
Dataset Size 7.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS3K_control_35ss
# 5027
Dataset Kind Image data
Dataset Size 7.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS3K_cyc_5dpf
# 5028
Datast ID FigureS3K_cyc_5dpf
Dataset Kind Image data
Dataset Size 7.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS3K_cyc_30ss
# 5029
Datast ID FigureS3K_cyc_30ss
Dataset Kind Image data
Dataset Size 7.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS3K_cyc_35ss
# 5030
Datast ID FigureS3K_cyc_35ss
Dataset Kind Image data
Dataset Size 7.9 MB
4D view
SSBD:OMERO
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