Summary of 140-Hirata-MouseBrainSlice


External Database
SSBD:database
SSBD:database URL

SSBD:repository
SSBD:repository URL

Title
Atlas of neuronal birthdate tagging mouse lines
Description
-
Release date
2022-04-15
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
84 ( Image datasets: 84, Quantitative data datasets: 0 )
Size of Datasets
1.6 TB ( Image datasets: 1.6 TB, Quantitative data datasets: 0 bytes )

Organism(s)
Mus musculus
Strain(s)
C57BL/6 Neurod1CreER(D1B); TaumGFP-nLacZ, C57BL/6 Neurog2CreER(G2A); TaumGFP-nLacZ, C57BL/6 Neurog1CreER(G1C); TaumGFP-nLacZ, C57BL/6 Neurod4CreER(D4A); TaumGFP-nLacZ
Reporter(s)
DAB, anti-GFP antibody, anti-beta-galactosidase antibody

Datatype
-
Molecular Function (MF)
-
Biological Process (BP)
nervous system development
Cellular Component (CC)
neuron projection, plasma membrane, cell body, nucleus
Biological Imaging Method
bright-field microscopy
X scale
1.0 micrometer/pixel
Y scale
1.0 micrometer/pixel
Z scale
20 micrometer/slice
T scale
-

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Tatsumi Hirata, Yukako Tohsato, Hiroya Itoga, Go Shioi, Hiroshi Kiyonari, Sanae Oka, Toshihiko Fujimori, Shuichi Onami (2021) NeuroGT: A brain atlas of neurogenic tagging CreER drivers for birthdate-based classification and manipulation of mouse neurons., Cell reports methods, Volume 1, Number 3, pp. 100012

Published in 2021 Jul 26 (Electronic publication in May 25, 2021, midnight )

(Abstract) Neuronal birthdate is one of the major determinants of neuronal phenotypes. However, most birthdating methods are retrospective in nature, allowing very little experimental access to the classified neuronal subsets. Here, we introduce four neurogenic tagging mouse lines, which can assign CreER-loxP recombination to neuron subsets that share the same differentiation timing in living animals and enable various experimental manipulations of the classified subsets. We constructed a brain atlas of the neurogenic tagging mouse lines (NeuroGT), which includes holistic image data of the loxP-recombined neurons and their processes across the entire brain that were tagged on each single day during the neurodevelopmental period. This image database, which is open to the public, offers investigators the opportunity to find specific neurogenic tagging driver lines and the stages of tagging appropriate for their own research purposes.

Contact
Tatsumi Hirata , National Institute of Genetics , Brain Function Laboratory
Contributors
Toshihiko Fujimori

Dataset List of 140-Hirata-MouseBrainSlice

Thumbnail
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
Download Images
Thumbnail Thumbnail for dataset G1CN_TM13.5_G
# 7639
Datast ID G1CN_TM13.5_G
Dataset Kind Image data
Dataset Size 21.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G1CN_TM13.5_L
# 7640
Datast ID G1CN_TM13.5_L
Dataset Kind Image data
Dataset Size 20.8 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G1CN_TM14.5_G
# 7641
Datast ID G1CN_TM14.5_G
Dataset Kind Image data
Dataset Size 19.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G1CN_TM14.5_L
# 7642
Datast ID G1CN_TM14.5_L
Dataset Kind Image data
Dataset Size 16.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G1CN_TM15.5_G
# 7643
Datast ID G1CN_TM15.5_G
Dataset Kind Image data
Dataset Size 23.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G1CN_TM15.5_L
# 7644
Datast ID G1CN_TM15.5_L
Dataset Kind Image data
Dataset Size 19.0 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G1CN_TM16.5_G
# 7645
Datast ID G1CN_TM16.5_G
Dataset Kind Image data
Dataset Size 20.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G1CN_TM16.5_L
# 7646
Datast ID G1CN_TM16.5_L
Dataset Kind Image data
Dataset Size 20.7 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G1CN_TM17.5_G
# 7647
Datast ID G1CN_TM17.5_G
Dataset Kind Image data
Dataset Size 22.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G1CN_TM17.5_L
# 7648
Datast ID G1CN_TM17.5_L
Dataset Kind Image data
Dataset Size 18.0 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G1CN_woTM_G
# 7649
Datast ID G1CN_woTM_G
Dataset Kind Image data
Dataset Size 24.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G1CN_woTM_L
# 7650
Datast ID G1CN_woTM_L
Dataset Kind Image data
Dataset Size 23.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G2AN_TM9.5_G
# 7651
Datast ID G2AN_TM9.5_G
Dataset Kind Image data
Dataset Size 22.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G2AN_TM9.5_L
# 7652
Datast ID G2AN_TM9.5_L
Dataset Kind Image data
Dataset Size 19.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G2AN_TM10.5_G
# 7653
Datast ID G2AN_TM10.5_G
Dataset Kind Image data
Dataset Size 21.7 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G2AN_TM10.5_L
# 7654
Datast ID G2AN_TM10.5_L
Dataset Kind Image data
Dataset Size 18.9 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G2AN_TM11.5_G
# 7655
Datast ID G2AN_TM11.5_G
Dataset Kind Image data
Dataset Size 19.8 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G2AN_TM11.5_L
# 7656
Datast ID G2AN_TM11.5_L
Dataset Kind Image data
Dataset Size 19.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G2AN_TM12.5_G
# 7657
Datast ID G2AN_TM12.5_G
Dataset Kind Image data
Dataset Size 25.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G2AN_TM12.5_L
# 7658
Datast ID G2AN_TM12.5_L
Dataset Kind Image data
Dataset Size 22.9 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G2AN_TM13.5_G
# 7659
Datast ID G2AN_TM13.5_G
Dataset Kind Image data
Dataset Size 22.0 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G2AN_TM13.5_L
# 7660
Datast ID G2AN_TM13.5_L
Dataset Kind Image data
Dataset Size 19.0 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G2AN_TM14.5_G
# 7661
Datast ID G2AN_TM14.5_G
Dataset Kind Image data
Dataset Size 20.0 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G2AN_TM14.5_L
# 7662
Datast ID G2AN_TM14.5_L
Dataset Kind Image data
Dataset Size 19.0 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G2AN_TM15.5_G
# 7663
Datast ID G2AN_TM15.5_G
Dataset Kind Image data
Dataset Size 24.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G2AN_TM15.5_L
# 7664
Datast ID G2AN_TM15.5_L
Dataset Kind Image data
Dataset Size 23.9 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G2AN_TM16.5_G
# 7665
Datast ID G2AN_TM16.5_G
Dataset Kind Image data
Dataset Size 24.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G2AN_TM16.5_L
# 7666
Datast ID G2AN_TM16.5_L
Dataset Kind Image data
Dataset Size 23.0 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G2AN_TM17.5_G
# 7667
Datast ID G2AN_TM17.5_G
Dataset Kind Image data
Dataset Size 21.8 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G2AN_TM17.5_L
# 7668
Datast ID G2AN_TM17.5_L
Dataset Kind Image data
Dataset Size 19.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G2AN_TM18.5_G
# 7669
Datast ID G2AN_TM18.5_G
Dataset Kind Image data
Dataset Size 25.6 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G2AN_TM18.5_L
# 7670
Datast ID G2AN_TM18.5_L
Dataset Kind Image data
Dataset Size 24.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G2AN_woTM_G
# 7671
Datast ID G2AN_woTM_G
Dataset Kind Image data
Dataset Size 19.6 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset G2AN_woTM_L
# 7672
Datast ID G2AN_woTM_L
Dataset Kind Image data
Dataset Size 19.8 GB
4D view
SSBD:OMERO
Download BDML
Download Image data