Summary of 119-Sakashita-FishVertebrae


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Title
A set of transverse sections of teleost fish vertebral bodies
Description
-
Release date
2019-11-20
Updated date
-
License
CC BY-NC-ND
Kind
Image data based on Experiment
Number of Datasets
141 ( Image datasets: 141, Quantitative data datasets: 0 )
Size of Datasets
140.1 GB ( Image datasets: 140.1 GB, Quantitative data datasets: 0 bytes )

Organism(s)
Takifugu snyderi, Histiopterus typus, Scarus forsteni, Rexea prometheoides, Acropoma hanedai, Muraenesox cinereus, Sebastes oblongus, Hippoglossoides dubius, Plecoglossus altivelis altivelis, Sebastes zonatus, Takifugu pardalis, Cololabis saira, Paralichthys olivaceus, Chelidonichthys spinosus, Zeus faber, Lophiomus setigerus, Thunnus tonggol, Takifugu stictonotus, Konosirus punctatus, Sillago japonica, Trachurus japonicus, Chaunax abei, Sardinops melanosticta, Thunnus orientalis, Helicolenus hilgendorfi, Lophius litulon, Macrorhamphosodes uradoi, Zenopsis nebulosus, Sphyraena pinguis, Pagrus major, Scomber japonicus, Macroramphosus sagifue

Datatype
vertebral bodies of teleost fish
Molecular Function (MF)
Biological Process (BP)
sclerotome development, trabecula formation
Cellular Component (CC)
-
Biological Imaging Method
-
XYZ Scale
-
T scale
-

Image Acquisition
Experiment type
Other
Microscope type
Other
Acquisition mode
Other
Contrast method
Other
Microscope model
SkyScan 1172
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Misaki Sakashita, Mao Sato, Shigeru Kondo (2019) Comparative morphological examination of vertebral bodies of teleost fish using high-resolution micro-CT scans., Journal of morphology, Volume 280, Number 6, pp. 778-795

Published in 2019 Jun (Electronic publication in April 4, 2019, midnight )

(Abstract) Vertebral bodies of teleost fish are formed by the sclerotomal bone covering the chordacentrum. The internal part of the sclerotomal bone is composed of an amphicoelous hourglass shaped autocentrum, which is common in most fish species. In contrast, the external shape of the sclerotomal bone varies extensively among species. There are multiple hypotheses regarding the composition and formation of the external structure. However, as they are based on studies of few extant or extinct species, their applicability to other species remains to be clarified. To understand the morphology, formation, and composition of vertebral bodies in teleosts, we performed a comparative analysis using micro-CT scans of 32 species from 10 orders of Teleostei and investigated the detailed morphology of the sclerotomal bone, especially its plate-like ridge and trabeculae. We discovered two structural characteristics that are shared among most of the examined species. One was the sheet-like trabeculae that extend radially from the center of the vertebral body with a constant thickness. The other was the presence of hollow spaces on the internal parts of the lateral ridge and trabeculae. The combination of different arrangements of sheet-like trabeculae and internal hollow spaces formed different shapes of the lateral structure of the vertebral body. The properties of these two characteristics suggest that the external part of the sclerotomal bone grows outward by deposition at the bone tip, and that, concurrently, bone absorption occurs in the internal part of the sclerotomal bone. The vertebral arches were also formed by the sheet-like trabeculae, indicating that both, the vertebral body and the arches, are formed by the same component. The micro-CT scanning data were uploaded to a public database so they can be used for future studies on fish vertebrae.
(MeSH Terms)

Contact
Misaki Sakashita, Shigeru Kondo , Osaka University , Graduate School of Frontier Biosciences , Laboratory of Pattern Formation
Contributors
Misaki Sakashita, Mao Sato, Shigeru Kondo

Dataset List of 119-Sakashita-FishVertebrae

Thumbnail
#
Dataset ID
Kind
Size
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Thumbnail Thumbnail for dataset Sillago_japonica_SL188mm
# 4795
Dataset Kind Image data
Dataset Size 3.3 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Sillago_japonica_SL188mm
# 4796
Dataset Kind Image data
Dataset Size 3.3 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Sillago_japonica_SL211mm
# 4797
Dataset Kind Image data
Dataset Size 3.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Sillago_japonica_SL211mm
# 4798
Dataset Kind Image data
Dataset Size 3.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Sillago_japonica_SL211mm
# 4799
Dataset Kind Image data
Dataset Size 3.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Sphyraena_pinguis_SL264mm
# 4800
Dataset Kind Image data
Dataset Size 2.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Sphyraena_pinguis_SL264mm
# 4801
Dataset Kind Image data
Dataset Size 2.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Sphyraena_pinguis_SL264mm
# 4802
Dataset Kind Image data
Dataset Size 2.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Sphyraena_pinguis_SL291mm
# 4803
Dataset Kind Image data
Dataset Size 2.1 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Sphyraena_pinguis_SL291mm
# 4804
Dataset Kind Image data
Dataset Size 2.1 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Sphyraena_pinguis_SL291mm
# 4805
Dataset Kind Image data
Dataset Size 2.1 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Takifugu_pardalis_TL170mm
# 4806
Dataset Kind Image data
Dataset Size 4.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Takifugu_pardalis_TL170mm
# 4807
Dataset Kind Image data
Dataset Size 4.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Takifugu_pardalis_TL170mm
# 4808
Dataset Kind Image data
Dataset Size 4.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Takifugu_snyderi_TL210mm
# 4809
Dataset Kind Image data
Dataset Size 3.9 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Takifugu_snyderi_TL210mm
# 4810
Dataset Kind Image data
Dataset Size 3.9 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Takifugu_stictonotus_SLV93mm
# 4811
Dataset Kind Image data
Dataset Size 2.5 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Takifugu_stictonotus_SLV93mm
# 4812
Dataset Kind Image data
Dataset Size 2.5 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Takifugu_stictonotus_SLV93mm
# 4813
Dataset Kind Image data
Dataset Size 2.5 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Thunnus_orientalis_SL429mm
# 4814
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Thunnus_orientalis_SL429mm
# 4815
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Thunnus_orientalis_SL429mm
# 4816
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Thunnus_orientalis_SL558mm
# 4817
Dataset Kind Image data
Dataset Size 3.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Thunnus_orientalis_SL558mm
# 4818
Dataset Kind Image data
Dataset Size 3.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Thunnus_orientalis_SL558mm
# 4819
Dataset Kind Image data
Dataset Size 3.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Thunnus_tonggol_TL550mm
# 4820
Dataset Kind Image data
Dataset Size 2.8 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Thunnus_tonggol_TL550mm
# 4821
Dataset Kind Image data
Dataset Size 2.8 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Trachurus_japonicus_TL320mm
# 4822
Dataset Kind Image data
Dataset Size 3.5 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Trachurus_japonicus_TL320mm
# 4823
Dataset Kind Image data
Dataset Size 3.5 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Trachurus_japonicus_TL320mm
# 4824
Dataset Kind Image data
Dataset Size 3.5 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Zenopsis_nebulosa_SL360mm
# 4825
Dataset Kind Image data
Dataset Size 3.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Zenopsis_nebulosa_SL360mm
# 4826
Dataset Kind Image data
Dataset Size 3.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Zenopsis_nebulosa_SL360mm
# 4827
Dataset Kind Image data
Dataset Size 3.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Zeus_faber_SL359mm
# 4828
Datast ID Zeus_faber_SL359mm
Dataset Kind Image data
Dataset Size 3.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Zeus_faber_SL359mm
# 4829
Datast ID Zeus_faber_SL359mm
Dataset Kind Image data
Dataset Size 3.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Zeus_faber_TL210mm
# 4830
Datast ID Zeus_faber_TL210mm
Dataset Kind Image data
Dataset Size 3.1 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Zeus_faber_TL210mm
# 4831
Datast ID Zeus_faber_TL210mm
Dataset Kind Image data
Dataset Size 3.1 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Zeus_faber_TL210mm
# 4832
Datast ID Zeus_faber_TL210mm
Dataset Kind Image data
Dataset Size 3.1 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Zeus_faber_TL300mm
# 4833
Datast ID Zeus_faber_TL300mm
Dataset Kind Image data
Dataset Size 4.9 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Zeus_faber_TL300mm
# 4834
Datast ID Zeus_faber_TL300mm
Dataset Kind Image data
Dataset Size 4.9 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Zeus_faber_TL300mm
# 4835
Datast ID Zeus_faber_TL300mm
Dataset Kind Image data
Dataset Size 4.9 GB
4D view
SSBD:OMERO
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