Summary of 119-Sakashita-FishVertebrae


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Title
A set of transverse sections of teleost fish vertebral bodies
Description
-
Release date
2019-11-20
Updated date
-
License
CC BY-NC-ND
Kind
Image data based on Experiment
Number of Datasets
141 ( Image datasets: 141, Quantitative data datasets: 0 )
Size of Datasets
140.1 GB ( Image datasets: 140.1 GB, Quantitative data datasets: 0 bytes )

Organism(s)
Takifugu snyderi, Histiopterus typus, Scarus forsteni, Rexea prometheoides, Acropoma hanedai, Muraenesox cinereus, Sebastes oblongus, Hippoglossoides dubius, Plecoglossus altivelis altivelis, Sebastes zonatus, Takifugu pardalis, Cololabis saira, Paralichthys olivaceus, Chelidonichthys spinosus, Zeus faber, Lophiomus setigerus, Thunnus tonggol, Takifugu stictonotus, Konosirus punctatus, Sillago japonica, Trachurus japonicus, Chaunax abei, Sardinops melanosticta, Thunnus orientalis, Helicolenus hilgendorfi, Lophius litulon, Macrorhamphosodes uradoi, Zenopsis nebulosus, Sphyraena pinguis, Pagrus major, Scomber japonicus, Macroramphosus sagifue

Datatype
vertebral bodies of teleost fish
Molecular Function (MF)
Biological Process (BP)
sclerotome development, trabecula formation
Cellular Component (CC)
-
Biological Imaging Method
-
XYZ Scale
-
T scale
-

Image Acquisition
Experiment type
Other
Microscope type
Other
Acquisition mode
Other
Contrast method
Other
Microscope model
SkyScan 1172
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Misaki Sakashita, Mao Sato, Shigeru Kondo (2019) Comparative morphological examination of vertebral bodies of teleost fish using high-resolution micro-CT scans., Journal of morphology, Volume 280, Number 6, pp. 778-795

Published in 2019 Jun (Electronic publication in April 4, 2019, midnight )

(Abstract) Vertebral bodies of teleost fish are formed by the sclerotomal bone covering the chordacentrum. The internal part of the sclerotomal bone is composed of an amphicoelous hourglass shaped autocentrum, which is common in most fish species. In contrast, the external shape of the sclerotomal bone varies extensively among species. There are multiple hypotheses regarding the composition and formation of the external structure. However, as they are based on studies of few extant or extinct species, their applicability to other species remains to be clarified. To understand the morphology, formation, and composition of vertebral bodies in teleosts, we performed a comparative analysis using micro-CT scans of 32 species from 10 orders of Teleostei and investigated the detailed morphology of the sclerotomal bone, especially its plate-like ridge and trabeculae. We discovered two structural characteristics that are shared among most of the examined species. One was the sheet-like trabeculae that extend radially from the center of the vertebral body with a constant thickness. The other was the presence of hollow spaces on the internal parts of the lateral ridge and trabeculae. The combination of different arrangements of sheet-like trabeculae and internal hollow spaces formed different shapes of the lateral structure of the vertebral body. The properties of these two characteristics suggest that the external part of the sclerotomal bone grows outward by deposition at the bone tip, and that, concurrently, bone absorption occurs in the internal part of the sclerotomal bone. The vertebral arches were also formed by the sheet-like trabeculae, indicating that both, the vertebral body and the arches, are formed by the same component. The micro-CT scanning data were uploaded to a public database so they can be used for future studies on fish vertebrae.
(MeSH Terms)

Contact
Misaki Sakashita, Shigeru Kondo , Osaka University , Graduate School of Frontier Biosciences , Laboratory of Pattern Formation
Contributors
Misaki Sakashita, Mao Sato, Shigeru Kondo

Dataset List of 119-Sakashita-FishVertebrae

Thumbnail
#
Dataset ID
Kind
Size
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Thumbnail Thumbnail for dataset Lophius_litulon_SL452mm
# 4745
Dataset Kind Image data
Dataset Size 3.4 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Lophius_litulon_SL452mm
# 4746
Dataset Kind Image data
Dataset Size 3.4 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Lophius_litulon_SL452mm
# 4747
Dataset Kind Image data
Dataset Size 3.4 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Lophius_litulon_SL623mm
# 4748
Dataset Kind Image data
Dataset Size 5.8 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Lophius_litulon_SL623mm
# 4749
Dataset Kind Image data
Dataset Size 5.8 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Lophius_litulon_SL623mm
# 4750
Dataset Kind Image data
Dataset Size 5.8 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Macroramphosus_sagifue_SL89mm
# 4751
Dataset Kind Image data
Dataset Size 1.8 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Macroramphosus_sagifue_SL89mm
# 4752
Dataset Kind Image data
Dataset Size 1.8 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Macroramphosus_sagifue_SL89mm
# 4753
Dataset Kind Image data
Dataset Size 1.8 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Macroramphosus_sagifue_SL90mm
# 4754
Dataset Kind Image data
Dataset Size 2.4 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Macroramphosus_sagifue_SL90mm
# 4755
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Macroramphosus_sagifue_SL90mm
# 4756
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Macrorhamphosodes_uradoi_SL126mm
# 4757
Dataset Kind Image data
Dataset Size 2.2 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Macrorhamphosodes_uradoi_SL126mm
# 4758
Dataset Kind Image data
Dataset Size 2.2 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Macrorhamphosodes_uradoi_SL126mm
# 4759
Dataset Kind Image data
Dataset Size 2.2 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Macrorhamphosodes_uradoi_SL146mm
# 4760
Dataset Kind Image data
Dataset Size 1.6 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Macrorhamphosodes_uradoi_SL146mm
# 4761
Dataset Kind Image data
Dataset Size 1.6 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Macrorhamphosodes_uradoi_SL146mm
# 4762
Dataset Kind Image data
Dataset Size 1.6 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Macrorhamphosodes_uradoi_SL93mm
# 4763
Dataset Kind Image data
Dataset Size 2.0 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Macrorhamphosodes_uradoi_SL93mm
# 4764
Dataset Kind Image data
Dataset Size 2.0 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Macrorhamphosodes_uradoi_SL93mm
# 4765
Dataset Kind Image data
Dataset Size 2.0 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Muraenesox_cinereus_TL860mm
# 4766
Dataset Kind Image data
Dataset Size 3.3 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Muraenesox_cinereus_TL860mm
# 4767
Dataset Kind Image data
Dataset Size 3.3 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Muraenesox_cinereus_TL860mm
# 4768
Dataset Kind Image data
Dataset Size 3.3 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Pagrus_major_TL230mm
# 4769
Dataset Kind Image data
Dataset Size 3.8 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Pagrus_major_TL230mm
# 4770
Dataset Kind Image data
Dataset Size 3.8 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Pagrus_major_TL230mm
# 4771
Dataset Kind Image data
Dataset Size 3.8 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Paralichthys_olivaceus_SL218mm
# 4772
Dataset Kind Image data
Dataset Size 3.6 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Paralichthys_olivaceus_SL218mm
# 4773
Dataset Kind Image data
Dataset Size 3.6 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Plecoglossus_altivelis_altivelis_SL227mm
# 4774
Dataset Kind Image data
Dataset Size 1.8 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Plecoglossus_altivelis_altivelis_SL227mm
# 4775
Dataset Kind Image data
Dataset Size 1.8 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Rexea_prometheoides_SL278mm
# 4776
Dataset Kind Image data
Dataset Size 3.3 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Rexea_prometheoides_SL278mm
# 4777
Dataset Kind Image data
Dataset Size 3.3 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Rexea_prometheoides_SL278mm
# 4778
Dataset Kind Image data
Dataset Size 3.3 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Sardinops_melanostictus_SL185mm
# 4779
Dataset Kind Image data
Dataset Size 2.6 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Sardinops_melanostictus_SL185mm
# 4780
Dataset Kind Image data
Dataset Size 2.6 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Sardinops_melanostictus_SL185mm
# 4781
Dataset Kind Image data
Dataset Size 2.6 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Scarus_forsteni_SL182mm
# 4782
Dataset Kind Image data
Dataset Size 2.6 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Scarus_forsteni_SL182mm
# 4783
Dataset Kind Image data
Dataset Size 2.6 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Scarus_forsteni_SL182mm
# 4784
Dataset Kind Image data
Dataset Size 2.6 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Scomber_japonicus_SL298mm
# 4785
Dataset Kind Image data
Dataset Size 2.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Scomber_japonicus_SL298mm
# 4786
Dataset Kind Image data
Dataset Size 2.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Scomber_japonicus_SL298mm
# 4787
Dataset Kind Image data
Dataset Size 2.7 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Sebastes_oblongus_TL240mm
# 4788
Dataset Kind Image data
Dataset Size 4.9 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Sebastes_oblongus_TL240mm
# 4789
Dataset Kind Image data
Dataset Size 4.9 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Sebastes_oblongus_TL240mm
# 4790
Dataset Kind Image data
Dataset Size 4.9 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Sebastes_zonatus_SLV120mm
# 4791
Dataset Kind Image data
Dataset Size 1.6 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Sebastes_zonatus_SLV120mm
# 4792
Dataset Kind Image data
Dataset Size 1.6 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Sebastes_zonatus_SLV120mm
# 4793
Dataset Kind Image data
Dataset Size 1.6 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Sillago_japonica_SL188mm
# 4794
Dataset Kind Image data
Dataset Size 3.3 GB
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SSBD:OMERO
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