SSBD:database

Thumbnail for 114-Shiura-MouseEmbryoDyn

Summary of 114-Shiura-MouseEmbryoDyn

SSBD:database
114-Shiura-MouseEmbryoDyn
SSBD:database URL
https://ssbd.riken.jp/database/114-Shiura-MouseEmbryoDyn/
SSBD:repository
ssbd-repos-000114
SSBD:repository URL
https://ssbd.riken.jp/repository/114/
Title
RNA-FISH and immunofluorescence images of Xist/Tsix expression during peri-implantation embryoic development using whole-mount 3D RNA-FISH
Description
-
Release date
2019-11-20
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
179 ( Image datasets: 179, Quantitative data datasets: 0 )
Size of Datasets
14.3 GB ( Image datasets: 14.3 GB, Quantitative data datasets: 0 bytes )
Organism(s)
Mus musculus
Gene symbol(s)
Lamp2, Pkg1, Tsix, Xist
Protein name(s)
CDX2, GATA6, NANOG, POU5F1
Datatype
X chromosome inactivation (XCI) dynamics
Molecular Function (MF)
Biological Process (BP)
dosage compensation by inactivation of X chromosome, gene expression
Cellular Component (CC)
necleus
Biological Imaging Method
-
XYZ Scale
XY: 0.2197266 micrometer/pixel, Z: 0.7 micrometer/slice, XY: 0.1757813 micrometer/pixel, Z: 0.7 micrometer/slice, XY: 0.2075665 micrometer/pixel, Z: 0.8 micrometer/slice, XY: 0.2372188 micrometer/pixel, Z: NA, XY: 0.2767553 micrometer/pixel, Z: 0.8 micrometer/slice, XY: 0.1660532 micrometer/pixel, Z: 0.8 micrometer/slice, XY: 0.1845035 micrometer/pixel, Z: 0.8 micrometer/slice, XY: 0.2372188 micrometer/pixel, Z: 0.8 micrometer/slice, XY: 0.2485922 micrometer/pixel, Z: 0.7 micrometer/slice, XY: 0.1660532 micrometer/pixel, Z: NA
T scale
-
Image Acquisition
Experiment type
Immunofluorescence
Microscope type
ConfocalMicroscope
Acquisition mode
LaserScanningConfocalMicroscopy
Contrast method
Fluorescence
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Related paper(s)
Contact
Kuniya Abe, Hirosuke Shiura , RIKEN , BioResource Research Center , Technology & Development Team for Mammalian Genome Dynamics,
Contributors
Hirosuke Shiura, Kuniya Abe

Dataset List of 114-Shiura-MouseEmbryoDyn

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#
Dataset ID
Kind
Size
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Thumbnail Thumbnail for dataset Fig2b_E4.75_2
# 4597
Datast ID Fig2b_E4.75_2
Dataset Kind Image data
Dataset Size 97.5 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2b_E4.75_3
# 4598
Datast ID Fig2b_E4.75_3
Dataset Kind Image data
Dataset Size 101.4 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2b_E4.75_4
# 4599
Datast ID Fig2b_E4.75_4
Dataset Kind Image data
Dataset Size 101.4 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2b_E5.0_1
# 4600
Datast ID Fig2b_E5.0_1
Dataset Kind Image data
Dataset Size 97.5 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2b_E5.0_2
# 4601
Datast ID Fig2b_E5.0_2
Dataset Kind Image data
Dataset Size 74.2 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2b_E5.0_3
# 4602
Datast ID Fig2b_E5.0_3
Dataset Kind Image data
Dataset Size 104.0 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2b_E5.0_4
# 4603
Datast ID Fig2b_E5.0_4
Dataset Kind Image data
Dataset Size 93.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2b_E5.25_1
# 4604
Datast ID Fig2b_E5.25_1
Dataset Kind Image data
Dataset Size 83.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2b_E5.25_2
# 4605
Datast ID Fig2b_E5.25_2
Dataset Kind Image data
Dataset Size 83.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2b_E5.25_3
# 4606
Datast ID Fig2b_E5.25_3
Dataset Kind Image data
Dataset Size 71.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2b_E5.25_4
# 4607
Datast ID Fig2b_E5.25_4
Dataset Kind Image data
Dataset Size 93.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2b_E5.25_5
# 4608
Datast ID Fig2b_E5.25_5
Dataset Kind Image data
Dataset Size 94.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2b_E5.50_1
# 4609
Datast ID Fig2b_E5.50_1
Dataset Kind Image data
Dataset Size 78.1 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2b_E5.50_2
# 4610
Datast ID Fig2b_E5.50_2
Dataset Kind Image data
Dataset Size 96.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2b_E5.50_3
# 4611
Datast ID Fig2b_E5.50_3
Dataset Kind Image data
Dataset Size 83.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2b_E5.50_4
# 4612
Datast ID Fig2b_E5.50_4
Dataset Kind Image data
Dataset Size 91.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2c_E5.0
# 4613
Datast ID Fig2c_E5.0
Dataset Kind Image data
Dataset Size 117.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2d_E4.25
# 4614
Datast ID Fig2d_E4.25
Dataset Kind Image data
Dataset Size 122.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2e-g_E4.5
# 4615
Datast ID Fig2e-g_E4.5
Dataset Kind Image data
Dataset Size 109.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3a_5mC5hmc_E4.5
# 4616
Datast ID Fig3a_5mC5hmc_E4.5
Dataset Kind Image data
Dataset Size 46.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3a_5mC5hmc_E4.75
# 4617
Datast ID Fig3a_5mC5hmc_E4.75
Dataset Kind Image data
Dataset Size 65.1 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3a_5mC5hmc_E5.25
# 4618
Datast ID Fig3a_5mC5hmc_E5.25
Dataset Kind Image data
Dataset Size 46.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3b_H3K9me2_E4.5
# 4619
Datast ID Fig3b_H3K9me2_E4.5
Dataset Kind Image data
Dataset Size 21.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3b_H3K9me2_E4.75
# 4620
Datast ID Fig3b_H3K9me2_E4.75
Dataset Kind Image data
Dataset Size 26.4 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3b_H3K9me2_E5.5
# 4621
Datast ID Fig3b_H3K9me2_E5.5
Dataset Kind Image data
Dataset Size 37.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3b_H3K9me3_E4.5
# 4622
Datast ID Fig3b_H3K9me3_E4.5
Dataset Kind Image data
Dataset Size 34.7 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3b_H3K9me3_E4.75
# 4623
Datast ID Fig3b_H3K9me3_E4.75
Dataset Kind Image data
Dataset Size 31.6 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3b_H3K9me3_E5.5
# 4624
Datast ID Fig3b_H3K9me3_E5.5
Dataset Kind Image data
Dataset Size 37.2 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3c_H3K27me3_E3.5
# 4625
Datast ID Fig3c_H3K27me3_E3.5
Dataset Kind Image data
Dataset Size 28.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3c_H3K27me3_E4.5
# 4626
Datast ID Fig3c_H3K27me3_E4.5
Dataset Kind Image data
Dataset Size 36.8 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3c_H3K27me3_E4.75
# 4627
Datast ID Fig3c_H3K27me3_E4.75
Dataset Kind Image data
Dataset Size 41.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3c_H3K27me3_E5.25
# 4628
Datast ID Fig3c_H3K27me3_E5.25
Dataset Kind Image data
Dataset Size 33.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3d_E4.5
# 4629
Datast ID Fig3d_E4.5
Dataset Kind Image data
Dataset Size 37.9 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3d_E5.5
# 4630
Datast ID Fig3d_E5.5
Dataset Kind Image data
Dataset Size 129.9 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1a_E3.5_ICM-Epi
# 4631
Datast ID FigS1a_E3.5_ICM-Epi
Dataset Kind Image data
Dataset Size 26.2 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1a_E3.5_TE-ExE
# 4632
Datast ID FigS1a_E3.5_TE-ExE
Dataset Kind Image data
Dataset Size 81.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1a_E3.75_ICM-Epi
# 4633
Datast ID FigS1a_E3.75_ICM-Epi
Dataset Kind Image data
Dataset Size 85.8 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1a_E3.75_PE-VE
# 4634
Datast ID FigS1a_E3.75_PE-VE
Dataset Kind Image data
Dataset Size 16.8 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1a_E3.75_TE-ExE
# 4635
Datast ID FigS1a_E3.75_TE-ExE
Dataset Kind Image data
Dataset Size 88.4 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1a_E4.0_ICM-Epi
# 4636
Datast ID FigS1a_E4.0_ICM-Epi
Dataset Kind Image data
Dataset Size 52.1 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1a_E4.0_PE-VE
# 4637
Datast ID FigS1a_E4.0_PE-VE
Dataset Kind Image data
Dataset Size 52.1 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1a_E4.0_TE-ExE
# 4638
Datast ID FigS1a_E4.0_TE-ExE
Dataset Kind Image data
Dataset Size 83.2 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1a_E4.25_ICM-Epi
# 4639
Datast ID FigS1a_E4.25_ICM-Epi
Dataset Kind Image data
Dataset Size 67.7 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1a_E4.25_PE-VE
# 4640
Datast ID FigS1a_E4.25_PE-VE
Dataset Kind Image data
Dataset Size 87.1 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1a_E4.25_TE-ExE
# 4641
Datast ID FigS1a_E4.25_TE-ExE
Dataset Kind Image data
Dataset Size 87.1 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1a_E4.50_ICM-Epi
# 4642
Datast ID FigS1a_E4.50_ICM-Epi
Dataset Kind Image data
Dataset Size 66.4 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1a_E4.50_PE-VE
# 4643
Datast ID FigS1a_E4.50_PE-VE
Dataset Kind Image data
Dataset Size 66.4 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1a_E4.50_TE-ExE
# 4644
Datast ID FigS1a_E4.50_TE-ExE
Dataset Kind Image data
Dataset Size 66.4 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1a_E4.75_ICM-Epi
# 4645
Datast ID FigS1a_E4.75_ICM-Epi
Dataset Kind Image data
Dataset Size 80.6 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1a_E4.75_PE-VE
# 4646
Datast ID FigS1a_E4.75_PE-VE
Dataset Kind Image data
Dataset Size 1.5 MB
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SSBD:OMERO
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