Summary of 50-Tainaka-MouseBodyCUBIC
Kind
Image data
based on Experiment
Number of Datasets
40
( Image datasets: 40,
Quantitative data datasets: 0 )
Size of Datasets
113.4 MB
( Image datasets: 113.4 MB,
Quantitative data datasets: 0 bytes )
Biological Process (BP)
-
Cellular Component (CC)
-
Biological Imaging Method
-
XYZ Scale
XY: 0.001 inch/pixel, Z: NA
Image Acquisition
Experiment type
Other
Microscope type
ConfocalMicroscope
Acquisition mode
LaserScanningConfocalMicroscopy
Contrast method
Fluorescence
Microscope model
LaVision Bio Tec Ultramicroscope + Olympus MVX-ZB10
Detector model
Andor sCMOS CCD camera Neo 5.5
Objective model
Olympus MVPLAPO 0.63x/0.15
Filter set
Ultramicroscope filter wheel unit
Related paper(s)
Kazuki Tainaka, Shimpei I Kubota, Takeru Q Suyama, Etsuo A Susaki, Dimitri Perrin, Maki Ukai-Tadenuma, Hideki Ukai, Hiroki R Ueda (2014) Whole-body imaging with single-cell resolution by tissue decolorization., Cell, Volume 159, Number 4, pp. 911-24
Published in 2014 Nov 6
(Abstract) The development of whole-body imaging at single-cell resolution enables system-level approaches to studying cellular circuits in organisms. Previous clearing methods focused on homogenizing mismatched refractive indices of individual tissues, enabling reductions in opacity but falling short of achieving transparency. Here, we show that an aminoalcohol decolorizes blood by efficiently eluting the heme chromophore from hemoglobin. Direct transcardial perfusion of an aminoalcohol-containing cocktail that we previously termed CUBIC coupled with a 10 day to 2 week clearing protocol decolorized and rendered nearly transparent almost all organs of adult mice as well as the entire body of infant and adult mice. This CUBIC-perfusion protocol enables rapid whole-body and whole-organ imaging at single-cell resolution by using light-sheet fluorescent microscopy. The CUBIC protocol is also applicable to 3D pathology, anatomy, and immunohistochemistry of various organs. These results suggest that whole-body imaging of colorless tissues at high resolution will contribute to organism-level systems biology.
(MeSH Terms)
Contact
Hiroki R Ueda
, RIKEN
, Quantitative Biology Center
, Laboratory for Synthetic Biology
Contributors
Kazuki Tainaka, Shimpei I. Kubota, Takeru Q. Suyama, Etsuo A. Susaki, Dimitri Perrin, Maki Ukai-Tadenuma, Hideki Ukai, Hiroki R. Ueda
SSBD:OMERO.gallery Project
SSBD:OMERO Project
Dataset List of 50-Tainaka-MouseBodyCUBIC
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
Download Images
Dataset Kind
Image data
Dataset Size
10.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (8.9 MB)
Dataset Kind
Image data
Dataset Size
13.3 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (11.4 MB)
Dataset Kind
Image data
Dataset Size
6.5 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (5.2 MB)
Dataset Kind
Image data
Dataset Size
4.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (2.9 MB)
Dataset Kind
Image data
Dataset Size
15.3 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (13.8 MB)
Dataset Kind
Image data
Dataset Size
9.8 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (8.1 MB)
Dataset Kind
Image data
Dataset Size
8.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (7.5 MB)
Dataset Kind
Image data
Dataset Size
2.8 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (1.5 MB)
Dataset Kind
Image data
Dataset Size
1.3 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (1.1 MB)
Dataset Kind
Image data
Dataset Size
1.3 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (1.1 MB)
Dataset Kind
Image data
Dataset Size
2.4 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (1.9 MB)
Dataset Kind
Image data
Dataset Size
521.6 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (443.4 KB)
Dataset Kind
Image data
Dataset Size
422.0 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (345.2 KB)
Dataset Kind
Image data
Dataset Size
1.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (1013.1 KB)
Dataset Kind
Image data
Dataset Size
1.0 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (908.5 KB)
Dataset Kind
Image data
Dataset Size
277.8 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (206.1 KB)
Dataset Kind
Image data
Dataset Size
2.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (1.8 MB)
Dataset Kind
Image data
Dataset Size
540.4 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (394.8 KB)
Dataset Kind
Image data
Dataset Size
747.6 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (530.9 KB)
Dataset Kind
Image data
Dataset Size
2.2 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (1.7 MB)
Dataset Kind
Image data
Dataset Size
704.4 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (550.3 KB)
Dataset Kind
Image data
Dataset Size
1.1 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (906.1 KB)
Dataset Kind
Image data
Dataset Size
1.5 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (1.2 MB)
Dataset Kind
Image data
Dataset Size
525.7 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (443.6 KB)
Dataset Kind
Image data
Dataset Size
337.7 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (261.5 KB)
Dataset Kind
Image data
Dataset Size
1.5 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (1.2 MB)
Dataset Kind
Image data
Dataset Size
346.3 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (273.3 KB)
Dataset Kind
Image data
Dataset Size
380.8 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (304.5 KB)
Dataset Kind
Image data
Dataset Size
973.0 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (758.1 KB)
Dataset Kind
Image data
Dataset Size
475.8 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (402.2 KB)
Dataset Kind
Image data
Dataset Size
684.4 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (539.9 KB)
Dataset Kind
Image data
Dataset Size
869.6 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (598.1 KB)
Dataset Kind
Image data
Dataset Size
351.3 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (271.2 KB)
Dataset Kind
Image data
Dataset Size
360.2 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (281.2 KB)
Dataset Kind
Image data
Dataset Size
834.2 KB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (538.9 KB)
Dataset Kind
Image data
Dataset Size
3.8 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (3.3 MB)
Dataset Kind
Image data
Dataset Size
3.0 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (2.6 MB)
Dataset Kind
Image data
Dataset Size
3.9 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (3.4 MB)
Dataset Kind
Image data
Dataset Size
4.3 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (3.8 MB)
Dataset Kind
Image data
Dataset Size
1.7 MB
4D view
4D View
SSBD:OMERO
gallery
index
Download BDML
zip
Download Image data
zip (1.4 MB)