Detail of Fig4_pancreas_Z

(Too many images for preview; see images in SSBD:OMERO Dataset)


Project
Title
Light-sheet fluorescence microscopy (LSFM) images of a pancreas from nuclear-stained beta-actin-nuc-33mKate2 KI mouse
Description
NA
Release, Updated
2017-10-03,
2018-11-15
License
CC BY
Kind
Image data based on Experiment
File Formats
Data size
973.0 KB

Organism
M. musculus ( NCBI:txid10090 )
Strain(s)
-
Cell Line
-

Datatype
organ structure
Molecular Function (MF)
Biological Process (BP)
-
Cellular Component (CC)
-
Biological Imaging Method
XYZ Scale
XY: 0.001 inch/pixel, Z: NA
T scale
-

Image Acquisition
Experiment type
Other
Microscope type
ConfocalMicroscope
Acquisition mode
LaserScanningConfocalMicroscopy
Contrast method
Fluorescence
Microscope model
LaVision Bio Tec Ultramicroscope + Olympus MVX-ZB10
Detector model
Andor sCMOS CCD camera Neo 5.5
Objective model
Olympus MVPLAPO 0.63x/0.15
Filter set

Summary of Methods
See details in Tainaka et al. (2014) Cell, 159(4): 911–924.
Related paper(s)

Kazuki Tainaka, Shimpei I Kubota, Takeru Q Suyama, Etsuo A Susaki, Dimitri Perrin, Maki Ukai-Tadenuma, Hideki Ukai, Hiroki R Ueda (2014) Whole-body imaging with single-cell resolution by tissue decolorization., Cell, Volume 159, Number 4, pp. 911-24

Published in 2014 Nov 6

(Abstract) The development of whole-body imaging at single-cell resolution enables system-level approaches to studying cellular circuits in organisms. Previous clearing methods focused on homogenizing mismatched refractive indices of individual tissues, enabling reductions in opacity but falling short of achieving transparency. Here, we show that an aminoalcohol decolorizes blood by efficiently eluting the heme chromophore from hemoglobin. Direct transcardial perfusion of an aminoalcohol-containing cocktail that we previously termed CUBIC coupled with a 10 day to 2 week clearing protocol decolorized and rendered nearly transparent almost all organs of adult mice as well as the entire body of infant and adult mice. This CUBIC-perfusion protocol enables rapid whole-body and whole-organ imaging at single-cell resolution by using light-sheet fluorescent microscopy. The CUBIC protocol is also applicable to 3D pathology, anatomy, and immunohistochemistry of various organs. These results suggest that whole-body imaging of colorless tissues at high resolution will contribute to organism-level systems biology.
(MeSH Terms)

Contact
Hiroki R Ueda , RIKEN , Quantitative Biology Center , Laboratory for Synthetic Biology
Contributors
Kazuki Tainaka, Shimpei I. Kubota, Takeru Q. Suyama, Etsuo A. Susaki, Dimitri Perrin, Maki Ukai-Tadenuma, Hideki Ukai, Hiroki R. Ueda

OMERO Dataset
OMERO Project
Source