SSBD:database

Thumbnail for 331-Shimojo-MouseBrainAnatomicalRegion

Summary of 331-Shimojo-MouseBrainAnatomicalRegion

SSBD:database
331-Shimojo-MouseBrainAnatomicalRegion
SSBD:database URL
https://ssbd.riken.jp/database/331-Shimojo-MouseBrainAnatomicalRegion/
DOI
https://doi.org/10.24631/ssbd.db.2023.12.331
SSBD:repository
ssbd-repos-000331
SSBD:repository URL
https://ssbd.riken.jp/repository/331/
Title
Semantic segmentation data of eight anatomical regions for mouse brain slices with neurogenic-tagged neurons from NeuroGT database
Description
-
Release date
2023-12-24
Updated date
-
License
CC BY
Kind
Quantitative data based on Experiment
Number of Datasets
84 ( Image datasets: 0, Quantitative data datasets: 84 )
Size of Datasets
52.4 GB ( Image datasets: 0 bytes, Quantitative data datasets: 52.4 GB )
Organism(s)
Mus musculus
Strain(s)
C57BL/6 Neurod1^{CreER}(D1B); Tau^{mGFP-nLacZ}, C57BL/6 neuroG2^{CreER}(G2A); Tau^{mGFP-nLacZ}, C57BL/6 Neurod4^{CreER}(D4A); Tau^{mGFP-nLacZ}, C57BL/6 Neurog1^{CreER}(G1C); Tau^{mGFP-nLacZ}
Datatype
-
Molecular Function (MF)
Biological Process (BP)
nervous system development
Cellular Component (CC)
neuron projection, plasma membrane
Biological Imaging Method
-
X scale
1.0 micrometer/pixel
Y scale
1.0 micrometer/pixel
Z scale
20 micrometer/slice
T scale
-
Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Related paper(s)

Shimojo,Yuki, Suehara,Kazuki, Hirata,Tatsumi, Tohsato,Yukako (2024) Segmentation of Mouse Brain Slices with Unsupervised Domain Adaptation Considering Cross-sectional Locations, IPSJ Transactions on Bioinformatics, Volume 17, Number , 33-39

Published in 2024

(Abstract) None
Contact
Yukako Tohsato , Ritsumeikan University , Faculty of Information Science and Engineering , Laboratory of compubational biology
Contributors
Yuki Shimojo, Kazuki Suehara, Tatsumi Hirata, Yukako Tohsato

Dataset List of 331-Shimojo-MouseBrainAnatomicalRegion

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#
Dataset ID
Kind
Size
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Thumbnail Thumbnail for dataset G1CN_TM13.5_G
# 11059
Datast ID G1CN_TM13.5_G
Dataset Kind Quantitative data
Dataset Size 686.6 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset G1CN_TM13.5_L
# 11060
Datast ID G1CN_TM13.5_L
Dataset Kind Quantitative data
Dataset Size 671.1 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset G1CN_TM14.5_G
# 11061
Datast ID G1CN_TM14.5_G
Dataset Kind Quantitative data
Dataset Size 614.6 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset G1CN_TM14.5_L
# 11062
Datast ID G1CN_TM14.5_L
Dataset Kind Quantitative data
Dataset Size 635.8 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset G1CN_TM15.5_G
# 11063
Datast ID G1CN_TM15.5_G
Dataset Kind Quantitative data
Dataset Size 648.5 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset G1CN_TM15.5_L
# 11064
Datast ID G1CN_TM15.5_L
Dataset Kind Quantitative data
Dataset Size 603.4 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset G1CN_TM16.5_G
# 11065
Datast ID G1CN_TM16.5_G
Dataset Kind Quantitative data
Dataset Size 613.7 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset G1CN_TM16.5_L
# 11066
Datast ID G1CN_TM16.5_L
Dataset Kind Quantitative data
Dataset Size 614.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset G1CN_TM17.5_G
# 11067
Datast ID G1CN_TM17.5_G
Dataset Kind Quantitative data
Dataset Size 601.0 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset G1CN_TM17.5_L
# 11068
Datast ID G1CN_TM17.5_L
Dataset Kind Quantitative data
Dataset Size 578.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset G1CN_woTM_G
# 11069
Datast ID G1CN_woTM_G
Dataset Kind Quantitative data
Dataset Size 711.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset G1CN_woTM_L
# 11070
Datast ID G1CN_woTM_L
Dataset Kind Quantitative data
Dataset Size 737.2 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset G2AN_TM9.5_G
# 11071
Datast ID G2AN_TM9.5_G
Dataset Kind Quantitative data
Dataset Size 668.8 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset G2AN_TM9.5_L
# 11072
Datast ID G2AN_TM9.5_L
Dataset Kind Quantitative data
Dataset Size 657.3 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset G2AN_TM10.5_G
# 11073
Datast ID G2AN_TM10.5_G
Dataset Kind Quantitative data
Dataset Size 633.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset G2AN_TM10.5_L
# 11074
Datast ID G2AN_TM10.5_L
Dataset Kind Quantitative data
Dataset Size 592.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset G2AN_TM11.5_G
# 11075
Datast ID G2AN_TM11.5_G
Dataset Kind Quantitative data
Dataset Size 628.4 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset G2AN_TM11.5_L
# 11076
Datast ID G2AN_TM11.5_L
Dataset Kind Quantitative data
Dataset Size 593.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset G2AN_TM12.5_G
# 11077
Datast ID G2AN_TM12.5_G
Dataset Kind Quantitative data
Dataset Size 751.8 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset G2AN_TM12.5_L
# 11078
Datast ID G2AN_TM12.5_L
Dataset Kind Quantitative data
Dataset Size 716.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset G2AN_TM13.5_G
# 11079
Datast ID G2AN_TM13.5_G
Dataset Kind Quantitative data
Dataset Size 712.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset G2AN_TM13.5_L
# 11080
Datast ID G2AN_TM13.5_L
Dataset Kind Quantitative data
Dataset Size 756.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset G2AN_TM14.5_G
# 11081
Datast ID G2AN_TM14.5_G
Dataset Kind Quantitative data
Dataset Size 666.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset G2AN_TM14.5_L
# 11082
Datast ID G2AN_TM14.5_L
Dataset Kind Quantitative data
Dataset Size 635.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset G2AN_TM15.5_G
# 11083
Datast ID G2AN_TM15.5_G
Dataset Kind Quantitative data
Dataset Size 722.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset G2AN_TM15.5_L
# 11084
Datast ID G2AN_TM15.5_L
Dataset Kind Quantitative data
Dataset Size 707.5 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset G2AN_TM16.5_G
# 11085
Datast ID G2AN_TM16.5_G
Dataset Kind Quantitative data
Dataset Size 701.4 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset G2AN_TM16.5_L
# 11086
Datast ID G2AN_TM16.5_L
Dataset Kind Quantitative data
Dataset Size 686.5 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset G2AN_TM17.5_G
# 11087
Datast ID G2AN_TM17.5_G
Dataset Kind Quantitative data
Dataset Size 702.6 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset G2AN_TM17.5_L
# 11088
Datast ID G2AN_TM17.5_L
Dataset Kind Quantitative data
Dataset Size 692.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset G2AN_TM18.5_G
# 11089
Datast ID G2AN_TM18.5_G
Dataset Kind Quantitative data
Dataset Size 742.5 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset G2AN_TM18.5_L
# 11090
Datast ID G2AN_TM18.5_L
Dataset Kind Quantitative data
Dataset Size 723.7 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset G2AN_woTM_G
# 11091
Datast ID G2AN_woTM_G
Dataset Kind Quantitative data
Dataset Size 563.1 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset G2AN_woTM_L
# 11092
Datast ID G2AN_woTM_L
Dataset Kind Quantitative data
Dataset Size 574.1 MB
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SSBD:OMERO
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