SSBD:database

Detail of G1CN_TM13.5_G

(Too many images for preview; see images in SSBD:OMERO Dataset)
Project
331-Shimojo-MouseBrainAnatomicalRegion
Title
BDML file for semantic segmentation data of eight anatomical regions (isocortex, olfactory area, hippocampal formation, cerebral nuclei, interbrain, midbrain, hindbrain, and cerebellum) for images of samples obtained by slicing P7 mouse brain (G1CN_TM13.5_G dataset) that was neurogenic-tagged at E13.5 and was visualized for membrane-localized GFP reporter (G)
Description
semantic segmentation data of eight anatomical regions (isocortex, olfactory area, hippocampal formation, cerebral nuclei, interbrain, midbrain, hindbrain, and cerebellum) for images of samples obtained by slicing P7 mouse brain (G1CN_TM13.5_G dataset) that was neurogenic-tagged at E13.5 and was visualized for membrane-localized GFP reporter (G)
Release, Updated
2023-12-24
License
CC-BY
Kind
Quantitative data based on Experiment
File Formats
BDML/BD5
Data size
686.6 MB
Organism
Mus musculus ( NCBITaxon:10090 )
Strain(s)
C57BL/6 Neurog1^{CreER}(G1C); Tau^{mGFP-nLacZ}
Cell Line
-
Datatype
-
Molecular Function (MF)
Biological Process (BP)
nervous system development ( GO:0007399 )
Cellular Component (CC)
plasma membrane ( GO:0005886 ) neuron projection ( GO:0043005 )
Biological Imaging Method
X scale
1.0 micrometer/pixel
Y scale
1.0 micrometer/pixel
Z scale
20 micrometer/slice
T scale
-
Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Summary of Methods
Under article review.
Contact
Yukako Tohsato , Ritsumeikan University , Faculty of Information Science and Engineering , Laboratory of compubational biology
Contributors
Yuki Shimojo, Kazuki Suehara, Tatsumi Hirata, Yukako Tohsato
Local ID
G1CN_TM13.5_G
BDML ID
ad5bf3e9-cfa7-4905-bab4-bdab45fb4658
BDML/BD5
https://ssbd.riken.jp/data/331-Shimojo-MouseBrainAnatomicalRegion/zip/G1CN_TM13.5_G_bdml3.0.zip (md5, 23.7 MB)
Database Link
http://ssbd.riken.jp/neurogt/
Source
https://ssbd.riken.jp/neurogt/zip/G1CN_TM13.5_G.zip (md5, 10.2 GB)