Summary of 180-Watabe-Biosensoractivity


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Title
Imges of different biosensors activity expressed in HeLa cells, MDCK cells or mice ear skin.
Description
-
Release date
2022-03-31
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
115 ( Image datasets: 115, Quantitative data datasets: 0 )
Size of Datasets
3.9 GB ( Image datasets: 3.9 GB, Quantitative data datasets: 0 bytes )

Organism(s)
Homo sapiens, Canis lupus familiaris, Mus musculus
Cell lines(s)
MDCK cell, HeLa cell
Protein name(s)
ERK, JNK, PKA, ROCK, bPAC
Protein tag(s)
mCherry
Reporter(s)
AKAR3EV, Booster- PKA, Booster-ERK, Booster-JNK, Booster-PKA, Booster-ROCK2, EKAREV

Datatype
-
Molecular Function (MF)
extracellular signal-regulated kinase activity
Biological Process (BP)
-
Cellular Component (CC)
-
Biological Imaging Method
FRET, differences in fluorescence lifetime, time lapse microscopy, fluorescence microscopy
X scale
0.0176398 centimetre/pixel, 0.31 micrometer/pixel, 1.242 micrometer/pixel, 0.621 micrometer/pixel, NA, 0.994 micrometer/pixel
Y scale
0.0176398 centimetre/pixel, 0.31 micrometer/pixel, 1.242 micrometer/pixel, 0.621 micrometer/pixel, NA, 0.994 micrometer/pixel
Z scale
1 micrometer/slice, 6 micrometer/slice, NA, 3 micrometer/slice
T scale
62 sec per time interval, 124 sec per time interval, 58 sec per time interval, 60 sec per time interval, 120 sec per time interval, 125 sec per time interval, 1 sec per time interval, 59 sec per time interval, 57 sec per time interval, 1 min per time interval, 122 sec per time interval, 60.47 sec per time interval, NA, 142 sec per time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Tetsuya Watabe, Kenta Terai, Kenta Sumiyama, Michiyuki Matsuda (2020) Booster, a Red-Shifted Genetically Encoded Forster Resonance Energy Transfer (FRET) Biosensor Compatible with Cyan Fluorescent Protein/Yellow Fluorescent Protein-Based FRET Biosensors and Blue Light-Responsive Optogenetic Tools., ACS sensors, Volume 5, Number 3, pp. 719-730

Published in 2020 Mar 27 (Electronic publication in Feb. 26, 2020, midnight )

(Abstract) Genetically encoded Forster resonance energy transfer (FRET)-based biosensors have been developed for the visualization of signaling molecule activities. Currently, most of them are comprised of cyan and yellow fluorescent proteins (CFP and YFP), precluding the use of multiple FRET biosensors within a single cell. Moreover, the FRET biosensors based on CFP and YFP are incompatible with the optogenetic tools that operate at blue light. To overcome these problems, here, we have developed FRET biosensors with red-shifted excitation and emission wavelengths. We chose mKOkappa and mKate2 as the favorable donor and acceptor pair by calculating the Forster distance. By optimizing the order of fluorescent proteins and modulatory domains of the FRET biosensors, we developed a FRET biosensor backbone named "Booster". The performance of the protein kinase A (PKA) biosensor based on the Booster backbone (Booster-PKA) was comparable to that of AKAR3EV, a previously developed FRET biosensor comprising CFP and YFP. For the proof of concept, we first showed simultaneous monitoring of activities of two protein kinases with Booster-PKA and ERK FRET biosensors based on CFP and YFP. Second, we showed monitoring of PKA activation by Beggiatoa photoactivated adenylyl cyclase, an optogenetic generator of cyclic AMP. Finally, we presented PKA activity in living tissues of transgenic mice expressing Booster-PKA. Collectively, the results demonstrate the effectiveness and versatility of Booster biosensors as an imaging tool in vitro and in vivo.
(MeSH Terms)

Contact
Kenta Terai , Graduate School of Medicine, Kyoto University , Department of Pathology and Biology of Diseases
Contributors

Dataset List of 180-Watabe-Biosensoractivity

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Dataset ID
Kind
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4524NES
# 7311
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4524NES_FSK
# 7312
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4525NES
# 7313
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4525NES_FSK
# 7314
Dataset Kind Image data
Dataset Size 497.6 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4526NES
# 7315
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4526NES_FSK
# 7316
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4527NES
# 7317
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4527NES_FSK
# 7318
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4528NES
# 7319
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4528NES_FSK
# 7320
Dataset Kind Image data
Dataset Size 468.7 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4529NES
# 7321
Dataset Kind Image data
Dataset Size 464.5 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4529NES_FSK
# 7322
Dataset Kind Image data
Dataset Size 468.7 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS5_3555NES_JNK
# 7323
Dataset Kind Image data
Dataset Size 51.4 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS5_3560NES_ERK
# 7324
Dataset Kind Image data
Dataset Size 50.8 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS5_4146NES_ROCK
# 7325
Dataset Kind Image data
Dataset Size 50.7 KB
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SSBD:OMERO
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