Summary of 180-Watabe-Biosensoractivity


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Title
Imges of different biosensors activity expressed in HeLa cells, MDCK cells or mice ear skin.
Description
-
Release date
2022-03-31
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
115 ( Image datasets: 115, Quantitative data datasets: 0 )
Size of Datasets
3.9 GB ( Image datasets: 3.9 GB, Quantitative data datasets: 0 bytes )

Organism(s)
Homo sapiens, Canis lupus familiaris, Mus musculus
Cell lines(s)
MDCK cell, HeLa cell
Protein name(s)
ERK, JNK, PKA, ROCK, bPAC
Protein tag(s)
mCherry
Reporter(s)
AKAR3EV, Booster- PKA, Booster-ERK, Booster-JNK, Booster-PKA, Booster-ROCK2, EKAREV

Datatype
-
Molecular Function (MF)
extracellular signal-regulated kinase activity
Biological Process (BP)
-
Cellular Component (CC)
-
Biological Imaging Method
FRET, differences in fluorescence lifetime, time lapse microscopy, fluorescence microscopy
X scale
0.0176398 centimetre/pixel, 0.31 micrometer/pixel, 1.242 micrometer/pixel, 0.621 micrometer/pixel, NA, 0.994 micrometer/pixel
Y scale
0.0176398 centimetre/pixel, 0.31 micrometer/pixel, 1.242 micrometer/pixel, 0.621 micrometer/pixel, NA, 0.994 micrometer/pixel
Z scale
1 micrometer/slice, 6 micrometer/slice, NA, 3 micrometer/slice
T scale
62 sec per time interval, 124 sec per time interval, 58 sec per time interval, 60 sec per time interval, 120 sec per time interval, 125 sec per time interval, 1 sec per time interval, 59 sec per time interval, 57 sec per time interval, 1 min per time interval, 122 sec per time interval, 60.47 sec per time interval, NA, 142 sec per time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Tetsuya Watabe, Kenta Terai, Kenta Sumiyama, Michiyuki Matsuda (2020) Booster, a Red-Shifted Genetically Encoded Forster Resonance Energy Transfer (FRET) Biosensor Compatible with Cyan Fluorescent Protein/Yellow Fluorescent Protein-Based FRET Biosensors and Blue Light-Responsive Optogenetic Tools., ACS sensors, Volume 5, Number 3, pp. 719-730

Published in 2020 Mar 27 (Electronic publication in Feb. 26, 2020, midnight )

(Abstract) Genetically encoded Forster resonance energy transfer (FRET)-based biosensors have been developed for the visualization of signaling molecule activities. Currently, most of them are comprised of cyan and yellow fluorescent proteins (CFP and YFP), precluding the use of multiple FRET biosensors within a single cell. Moreover, the FRET biosensors based on CFP and YFP are incompatible with the optogenetic tools that operate at blue light. To overcome these problems, here, we have developed FRET biosensors with red-shifted excitation and emission wavelengths. We chose mKOkappa and mKate2 as the favorable donor and acceptor pair by calculating the Forster distance. By optimizing the order of fluorescent proteins and modulatory domains of the FRET biosensors, we developed a FRET biosensor backbone named "Booster". The performance of the protein kinase A (PKA) biosensor based on the Booster backbone (Booster-PKA) was comparable to that of AKAR3EV, a previously developed FRET biosensor comprising CFP and YFP. For the proof of concept, we first showed simultaneous monitoring of activities of two protein kinases with Booster-PKA and ERK FRET biosensors based on CFP and YFP. Second, we showed monitoring of PKA activation by Beggiatoa photoactivated adenylyl cyclase, an optogenetic generator of cyclic AMP. Finally, we presented PKA activity in living tissues of transgenic mice expressing Booster-PKA. Collectively, the results demonstrate the effectiveness and versatility of Booster biosensors as an imaging tool in vitro and in vivo.
(MeSH Terms)

Contact
Kenta Terai , Graduate School of Medicine, Kyoto University , Department of Pathology and Biology of Diseases
Contributors

Dataset List of 180-Watabe-Biosensoractivity

Thumbnail
#
Dataset ID
Kind
Size
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Thumbnail Thumbnail for dataset Figure5B_ISO_HeLa_Isotiteration_thumb_w2FRET
# 7261
Dataset Kind Image data
Dataset Size 794.4 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5B_ISO_HeLa_Isotiteration_thumb_w3mKO2
# 7262
Dataset Kind Image data
Dataset Size 794.2 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5B_ISO_HeLa_Isotiteration_thumb_w4mKate2-FRET
# 7263
Dataset Kind Image data
Dataset Size 798.8 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5B_ISO_HeLa_Isotiteration_thumb_w5DIC-fast
# 7264
Dataset Kind Image data
Dataset Size 798.8 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5B_ISO_HeLa_Isotiteration_w1CFP
# 7265
Dataset Kind Image data
Dataset Size 140.5 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5B_ISO_HeLa_Isotiteration_w2FRET
# 7266
Dataset Kind Image data
Dataset Size 140.5 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5B_ISO_HeLa_Isotiteration_w3mKO2
# 7267
Dataset Kind Image data
Dataset Size 140.5 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5B_ISO_HeLa_Isotiteration_w4mKate2-FRET
# 7268
Dataset Kind Image data
Dataset Size 140.5 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5B_ISO_HeLa_Isotiteration_w5DIC-fast
# 7269
Dataset Kind Image data
Dataset Size 140.5 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure6B_bPAC_44934589_thumb_w2mKO2_s1
# 7270
Dataset Kind Image data
Dataset Size 2.0 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure6B_bPAC_44934589_thumb_w2mKO2_s2
# 7271
Dataset Kind Image data
Dataset Size 2.0 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure6B_bPAC_44934589_thumb_w2mKO2_s3
# 7272
Dataset Kind Image data
Dataset Size 2.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure6B_bPAC_44934589_thumb_w3mKate2-FRET_s1
# 7273
Dataset Kind Image data
Dataset Size 2.0 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure6B_bPAC_44934589_thumb_w3mKate2-FRET_s2
# 7274
Dataset Kind Image data
Dataset Size 2.0 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure6B_bPAC_44934589_thumb_w3mKate2-FRET_s3
# 7275
Dataset Kind Image data
Dataset Size 2.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure6B_bPAC_44934589_w2mKO2_s1
# 7276
Dataset Kind Image data
Dataset Size 361.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure6B_bPAC_44934589_w2mKO2_s2
# 7277
Dataset Kind Image data
Dataset Size 361.3 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure6B_bPAC_44934589_w2mKO2_s3
# 7278
Dataset Kind Image data
Dataset Size 361.3 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure6B_bPAC_44934589_w3mKate2-FRET_s1
# 7279
Dataset Kind Image data
Dataset Size 361.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure6B_bPAC_44934589_w3mKate2-FRET_s2
# 7280
Dataset Kind Image data
Dataset Size 361.3 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure6B_bPAC_44934589_w3mKate2-FRET_s3
# 7281
Dataset Kind Image data
Dataset Size 361.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure6C_mKate2FRET_raw_311-326
# 7282
Dataset Kind Image data
Dataset Size 32.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure6C_mKOk_raw_311-326
# 7283
Dataset Kind Image data
Dataset Size 32.1 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure7D_EarSkin_dbcAMP
# 7284
Dataset Kind Image data
Dataset Size 64.9 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure7D_EarSkin_dbcAMP_01
# 7285
Dataset Kind Image data
Dataset Size 65.2 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure7D_EarSkin_dbcAMP_02
# 7286
Dataset Kind Image data
Dataset Size 64.9 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure7D_EarSkin_dbcAMP_03
# 7287
Dataset Kind Image data
Dataset Size 64.9 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure7E_Crypt_dbcAMP
# 7288
Dataset Kind Image data
Dataset Size 62.8 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure7E_Crypt_dbcAMP_01
# 7289
Dataset Kind Image data
Dataset Size 62.9 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure7E_Crypt_dbcAMP_02
# 7290
Dataset Kind Image data
Dataset Size 62.9 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4514NES
# 7291
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4514NES_FSK
# 7292
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4515NES
# 7293
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4515NES_FSK
# 7294
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4516NES
# 7295
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4516NES_FSK
# 7296
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4517NES
# 7297
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4517NES_FSK
# 7298
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4518NES
# 7299
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4518NES_FSK
# 7300
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4519NES
# 7301
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4519NES_FSK
# 7302
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4520NES
# 7303
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4520NES_FSK
# 7304
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4521NES
# 7305
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4521NES_FSK
# 7306
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4522NES
# 7307
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4522NES_FSK
# 7308
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4523NES
# 7309
Dataset Kind Image data
Dataset Size 464.5 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS2_HeLa_4523NES_FSK
# 7310
Dataset Kind Image data
Dataset Size 468.7 KB
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SSBD:OMERO
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