SSBD:database

Summary of 140-Hirata-MouseBrainSlice

External Database
https://ssbd.riken.jp/neurogt/
SSBD:database
140-Hirata-MouseBrainSlice
SSBD:database URL
https://ssbd.riken.jp/database/140-Hirata-MouseBrainSlice/
SSBD:repository
ssbd-repos-000140
SSBD:repository URL
https://ssbd.riken.jp/repository/140/
Title
Atlas of neuronal birthdate tagging mouse lines
Description
-
Release date
2022-04-15
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
84 ( Image datasets: 84, Quantitative data datasets: 0 )
Size of Datasets
1.6 TB ( Image datasets: 1.6 TB, Quantitative data datasets: 0 bytes )
Organism(s)
Mus musculus
Strain(s)
C57BL/6 Neurod1CreER(D1B); TaumGFP-nLacZ, C57BL/6 Neurog2CreER(G2A); TaumGFP-nLacZ, C57BL/6 Neurog1CreER(G1C); TaumGFP-nLacZ, C57BL/6 Neurod4CreER(D4A); TaumGFP-nLacZ
Reporter(s)
DAB, anti-GFP antibody, anti-beta-galactosidase antibody
Datatype
-
Molecular Function (MF)
-
Biological Process (BP)
nervous system development
Cellular Component (CC)
neuron projection, plasma membrane, cell body, nucleus
Biological Imaging Method
bright-field microscopy
X scale
1.0 micrometer/pixel
Y scale
1.0 micrometer/pixel
Z scale
20 micrometer/slice
T scale
-
Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Related paper(s)

Tatsumi Hirata, Yukako Tohsato, Hiroya Itoga, Go Shioi, Hiroshi Kiyonari, Sanae Oka, Toshihiko Fujimori, Shuichi Onami (2021) NeuroGT: A brain atlas of neurogenic tagging CreER drivers for birthdate-based classification and manipulation of mouse neurons., Cell reports methods, Volume 1, Number 3, pp. 100012

Published in 2021 Jul 26 (Electronic publication in May 25, 2021, midnight )

(Abstract) Neuronal birthdate is one of the major determinants of neuronal phenotypes. However, most birthdating methods are retrospective in nature, allowing very little experimental access to the classified neuronal subsets. Here, we introduce four neurogenic tagging mouse lines, which can assign CreER-loxP recombination to neuron subsets that share the same differentiation timing in living animals and enable various experimental manipulations of the classified subsets. We constructed a brain atlas of the neurogenic tagging mouse lines (NeuroGT), which includes holistic image data of the loxP-recombined neurons and their processes across the entire brain that were tagged on each single day during the neurodevelopmental period. This image database, which is open to the public, offers investigators the opportunity to find specific neurogenic tagging driver lines and the stages of tagging appropriate for their own research purposes.
Contact
Tatsumi Hirata , National Institute of Genetics , Brain Function Laboratory
Contributors
Toshihiko Fujimori

Dataset List of 140-Hirata-MouseBrainSlice

#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
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# 7589
Datast ID D1BN_TM9.5_G
Dataset Kind Image data
Dataset Size 19.1 GB
4D view
SSBD:OMERO
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# 7590
Datast ID D1BN_TM9.5_L
Dataset Kind Image data
Dataset Size 15.1 GB
4D view
SSBD:OMERO
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# 7591
Datast ID D1BN_TM10.5_G
Dataset Kind Image data
Dataset Size 16.6 GB
4D view
SSBD:OMERO
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# 7592
Datast ID D1BN_TM10.5_L
Dataset Kind Image data
Dataset Size 15.6 GB
4D view
SSBD:OMERO
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# 7593
Datast ID D1BN_TM11.5_G
Dataset Kind Image data
Dataset Size 18.0 GB
4D view
SSBD:OMERO
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# 7594
Datast ID D1BN_TM11.5_L
Dataset Kind Image data
Dataset Size 16.9 GB
4D view
SSBD:OMERO
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# 7595
Datast ID D1BN_TM12.5_G
Dataset Kind Image data
Dataset Size 21.0 GB
4D view
SSBD:OMERO
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# 7596
Datast ID D1BN_TM12.5_L
Dataset Kind Image data
Dataset Size 20.7 GB
4D view
SSBD:OMERO
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# 7597
Datast ID D1BN_TM13.5_G
Dataset Kind Image data
Dataset Size 17.5 GB
4D view
SSBD:OMERO
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# 7598
Datast ID D1BN_TM13.5_L
Dataset Kind Image data
Dataset Size 15.4 GB
4D view
SSBD:OMERO
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# 7599
Datast ID D1BN_TM14.5_G
Dataset Kind Image data
Dataset Size 18.3 GB
4D view
SSBD:OMERO
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# 7600
Datast ID D1BN_TM14.5_L
Dataset Kind Image data
Dataset Size 18.1 GB
4D view
SSBD:OMERO
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# 7601
Datast ID D1BN_TM15.5_G
Dataset Kind Image data
Dataset Size 18.3 GB
4D view
SSBD:OMERO
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# 7602
Datast ID D1BN_TM15.5_L
Dataset Kind Image data
Dataset Size 17.0 GB
4D view
SSBD:OMERO
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# 7603
Datast ID D1BN_TM16.5_G
Dataset Kind Image data
Dataset Size 23.0 GB
4D view
SSBD:OMERO
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# 7604
Datast ID D1BN_TM16.5_L
Dataset Kind Image data
Dataset Size 21.1 GB
4D view
SSBD:OMERO
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# 7605
Datast ID D1BN_TM17.5_G
Dataset Kind Image data
Dataset Size 22.6 GB
4D view
SSBD:OMERO
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# 7606
Datast ID D1BN_TM17.5_L
Dataset Kind Image data
Dataset Size 21.1 GB
4D view
SSBD:OMERO
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# 7607
Datast ID D1BN_woTM_G
Dataset Kind Image data
Dataset Size 21.7 GB
4D view
SSBD:OMERO
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# 7608
Datast ID D1BN_woTM_L
Dataset Kind Image data
Dataset Size 21.0 GB
4D view
SSBD:OMERO
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# 7609
Datast ID D4AN_TM8.5_G
Dataset Kind Image data
Dataset Size 22.3 GB
4D view
SSBD:OMERO
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# 7610
Datast ID D4AN_TM8.5_L
Dataset Kind Image data
Dataset Size 20.5 GB
4D view
SSBD:OMERO
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# 7611
Datast ID D4AN_TM9.5_G
Dataset Kind Image data
Dataset Size 24.4 GB
4D view
SSBD:OMERO
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# 7612
Datast ID D4AN_TM9.5_L
Dataset Kind Image data
Dataset Size 18.4 GB
4D view
SSBD:OMERO
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# 7613
Datast ID D4AN_TM10.5_G
Dataset Kind Image data
Dataset Size 18.9 GB
4D view
SSBD:OMERO
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# 7614
Datast ID D4AN_TM10.5_L
Dataset Kind Image data
Dataset Size 16.3 GB
4D view
SSBD:OMERO
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# 7615
Datast ID D4AN_TM11.5_G
Dataset Kind Image data
Dataset Size 22.0 GB
4D view
SSBD:OMERO
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# 7616
Datast ID D4AN_TM11.5_L
Dataset Kind Image data
Dataset Size 17.9 GB
4D view
SSBD:OMERO
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# 7617
Datast ID D4AN_TM12.5_G
Dataset Kind Image data
Dataset Size 19.9 GB
4D view
SSBD:OMERO
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# 7618
Datast ID D4AN_TM12.5_L
Dataset Kind Image data
Dataset Size 18.0 GB
4D view
SSBD:OMERO
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# 7619
Datast ID D4AN_TM13.5_G
Dataset Kind Image data
Dataset Size 24.9 GB
4D view
SSBD:OMERO
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# 7620
Datast ID D4AN_TM13.5_L
Dataset Kind Image data
Dataset Size 25.2 GB
4D view
SSBD:OMERO
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# 7621
Datast ID D4AN_TM14.5_G
Dataset Kind Image data
Dataset Size 17.3 GB
4D view
SSBD:OMERO
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# 7622
Datast ID D4AN_TM14.5_L
Dataset Kind Image data
Dataset Size 16.0 GB
4D view
SSBD:OMERO
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# 7623
Datast ID D4AN_TM15.5_G
Dataset Kind Image data
Dataset Size 16.5 GB
4D view
SSBD:OMERO
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# 7624
Datast ID D4AN_TM15.5_L
Dataset Kind Image data
Dataset Size 14.9 GB
4D view
SSBD:OMERO
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# 7625
Datast ID D4AN_TM16.5_G
Dataset Kind Image data
Dataset Size 22.7 GB
4D view
SSBD:OMERO
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# 7626
Datast ID D4AN_TM16.5_L
Dataset Kind Image data
Dataset Size 22.4 GB
4D view
SSBD:OMERO
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# 7627
Datast ID D4AN_TM17.5_G
Dataset Kind Image data
Dataset Size 16.1 GB
4D view
SSBD:OMERO
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# 7628
Datast ID D4AN_TM17.5_L
Dataset Kind Image data
Dataset Size 15.4 GB
4D view
SSBD:OMERO
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# 7629
Datast ID D4AN_woTM_G
Dataset Kind Image data
Dataset Size 22.7 GB
4D view
SSBD:OMERO
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# 7630
Datast ID D4AN_woTM_L
Dataset Kind Image data
Dataset Size 21.6 GB
4D view
SSBD:OMERO
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# 7631
Datast ID G1CN_TM9.5_G
Dataset Kind Image data
Dataset Size 21.0 GB
4D view
SSBD:OMERO
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# 7632
Datast ID G1CN_TM9.5_L
Dataset Kind Image data
Dataset Size 20.3 GB
4D view
SSBD:OMERO
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# 7633
Datast ID G1CN_TM10.5_G
Dataset Kind Image data
Dataset Size 24.2 GB
4D view
SSBD:OMERO
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# 7634
Datast ID G1CN_TM10.5_L
Dataset Kind Image data
Dataset Size 20.4 GB
4D view
SSBD:OMERO
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# 7635
Datast ID G1CN_TM11.5_G
Dataset Kind Image data
Dataset Size 15.2 GB
4D view
SSBD:OMERO
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# 7636
Datast ID G1CN_TM11.5_L
Dataset Kind Image data
Dataset Size 13.8 GB
4D view
SSBD:OMERO
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# 7637
Datast ID G1CN_TM12.5_G
Dataset Kind Image data
Dataset Size 15.6 GB
4D view
SSBD:OMERO
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# 7638
Datast ID G1CN_TM12.5_L
Dataset Kind Image data
Dataset Size 14.2 GB
4D view
SSBD:OMERO
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# 7639
Datast ID G1CN_TM13.5_G
Dataset Kind Image data
Dataset Size 21.2 GB
4D view
SSBD:OMERO
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# 7640
Datast ID G1CN_TM13.5_L
Dataset Kind Image data
Dataset Size 20.8 GB
4D view
SSBD:OMERO
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# 7641
Datast ID G1CN_TM14.5_G
Dataset Kind Image data
Dataset Size 19.4 GB
4D view
SSBD:OMERO
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# 7642
Datast ID G1CN_TM14.5_L
Dataset Kind Image data
Dataset Size 16.3 GB
4D view
SSBD:OMERO
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# 7643
Datast ID G1CN_TM15.5_G
Dataset Kind Image data
Dataset Size 23.2 GB
4D view
SSBD:OMERO
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# 7644
Datast ID G1CN_TM15.5_L
Dataset Kind Image data
Dataset Size 19.0 GB
4D view
SSBD:OMERO
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# 7645
Datast ID G1CN_TM16.5_G
Dataset Kind Image data
Dataset Size 20.3 GB
4D view
SSBD:OMERO
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# 7646
Datast ID G1CN_TM16.5_L
Dataset Kind Image data
Dataset Size 20.7 GB
4D view
SSBD:OMERO
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# 7647
Datast ID G1CN_TM17.5_G
Dataset Kind Image data
Dataset Size 22.1 GB
4D view
SSBD:OMERO
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# 7648
Datast ID G1CN_TM17.5_L
Dataset Kind Image data
Dataset Size 18.0 GB
4D view
SSBD:OMERO
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# 7649
Datast ID G1CN_woTM_G
Dataset Kind Image data
Dataset Size 24.3 GB
4D view
SSBD:OMERO
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# 7650
Datast ID G1CN_woTM_L
Dataset Kind Image data
Dataset Size 23.2 GB
4D view
SSBD:OMERO
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# 7651
Datast ID G2AN_TM9.5_G
Dataset Kind Image data
Dataset Size 22.2 GB
4D view
SSBD:OMERO
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# 7652
Datast ID G2AN_TM9.5_L
Dataset Kind Image data
Dataset Size 19.3 GB
4D view
SSBD:OMERO
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# 7653
Datast ID G2AN_TM10.5_G
Dataset Kind Image data
Dataset Size 21.7 GB
4D view
SSBD:OMERO
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# 7654
Datast ID G2AN_TM10.5_L
Dataset Kind Image data
Dataset Size 18.9 GB
4D view
SSBD:OMERO
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# 7655
Datast ID G2AN_TM11.5_G
Dataset Kind Image data
Dataset Size 19.8 GB
4D view
SSBD:OMERO
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# 7656
Datast ID G2AN_TM11.5_L
Dataset Kind Image data
Dataset Size 19.3 GB
4D view
SSBD:OMERO
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# 7657
Datast ID G2AN_TM12.5_G
Dataset Kind Image data
Dataset Size 25.3 GB
4D view
SSBD:OMERO
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# 7658
Datast ID G2AN_TM12.5_L
Dataset Kind Image data
Dataset Size 22.9 GB
4D view
SSBD:OMERO
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# 7659
Datast ID G2AN_TM13.5_G
Dataset Kind Image data
Dataset Size 22.0 GB
4D view
SSBD:OMERO
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# 7660
Datast ID G2AN_TM13.5_L
Dataset Kind Image data
Dataset Size 19.0 GB
4D view
SSBD:OMERO
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# 7661
Datast ID G2AN_TM14.5_G
Dataset Kind Image data
Dataset Size 20.0 GB
4D view
SSBD:OMERO
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# 7662
Datast ID G2AN_TM14.5_L
Dataset Kind Image data
Dataset Size 19.0 GB
4D view
SSBD:OMERO
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# 7663
Datast ID G2AN_TM15.5_G
Dataset Kind Image data
Dataset Size 24.2 GB
4D view
SSBD:OMERO
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# 7664
Datast ID G2AN_TM15.5_L
Dataset Kind Image data
Dataset Size 23.9 GB
4D view
SSBD:OMERO
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# 7665
Datast ID G2AN_TM16.5_G
Dataset Kind Image data
Dataset Size 24.2 GB
4D view
SSBD:OMERO
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# 7666
Datast ID G2AN_TM16.5_L
Dataset Kind Image data
Dataset Size 23.0 GB
4D view
SSBD:OMERO
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# 7667
Datast ID G2AN_TM17.5_G
Dataset Kind Image data
Dataset Size 21.8 GB
4D view
SSBD:OMERO
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# 7668
Datast ID G2AN_TM17.5_L
Dataset Kind Image data
Dataset Size 19.4 GB
4D view
SSBD:OMERO
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# 7669
Datast ID G2AN_TM18.5_G
Dataset Kind Image data
Dataset Size 25.6 GB
4D view
SSBD:OMERO
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# 7670
Datast ID G2AN_TM18.5_L
Dataset Kind Image data
Dataset Size 24.5 GB
4D view
SSBD:OMERO
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# 7671
Datast ID G2AN_woTM_G
Dataset Kind Image data
Dataset Size 19.6 GB
4D view
SSBD:OMERO
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# 7672
Datast ID G2AN_woTM_L
Dataset Kind Image data
Dataset Size 19.8 GB
4D view
SSBD:OMERO
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