448-Temma-HeLaSPASIM

Author reviewed
Selective-plane-activation structured illumination microscopy
Project ID
448-Temma-HeLaSPASIM
Project SID
448
Title
Selective-plane-activation structured illumination microscopy
Description
The background light from out-of-focus planes hinders resolution enhancement in structured illumination microscopy when observing volumetric samples. Here we used selective plane illumination and reversibly photoswitchable fluorescent proteins to realize structured illumination within the focal plane and eliminate the out-of-focus background. Theoretical investigation of the imaging properties and experimental demonstrations show that selective plane activation is beneficial for imaging dense microstructures in cells and cell spheroids. All the image data in this project is already registered at https://doi.org/10.5281/zenodo.10652642.
Submission Date
-
Opened Date
-
Release Date
2026-03-16
Update Date
-
Kind
Image datasets
License
Project URL
-
Project DOI
-
Metadata Version
-
Template Version
3.0.2
Funding Information
This work was partially supported by Core Research for Evolutionary Science and Technology by Japan Science and Technology Agency (grant no. JPMJCR15N3 to T.N., JPMJCR1925 and JPMJPF2009 to K. Fujita). This work was also partially supported by a grant-in-aid from the Ministry of Education, Culture, Sports, Science and Technology, Japan (grant no. 18H05410 to T.N.). Part of this work was performed under the Research Program of ‘Dynamic Alliance for Open Innovation Bridging Human, Environment and Materials’ in ‘Network Joint Research Center for Materials and Devices’ to K. Fujita and T.N. R.H. acknowledges support by the Collaborative Research Center SFB 1278 (Poly Target, project C04) funded by the Deutsche Forschungsgemeinschaft and the Leibniz science campus Infecto-Optics, project HotAim 2.0.
Total
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Image datasets
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Quantitative datasets
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Biosample

Organism
Homo sapiens
( NCBITaxon:9606 )
Mus musculus
( NCBITaxon:10090 )
Strain
-
Cell
fibroblast ( CL:0000057 )
Cell line
HeLa-S3 cell ( CLO:0003699 )
MeSH
Fibroblasts ( D005347 )
Microscopy, Fluorescence ( D008856 )
Autophagosomes (D000071182)
HeLa Cells ( D006367 )
Actin Cytoskeleton ( D008841 )
Time-Lapse Imaging ( D059008 )
Mitochondria ( D008928 )
Cell Nucleus ( D002467 )

Ontology

Anatomical Entity
-
UBERON
-
Biological Process
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Cellular Component
autophagosome ( GO:0005776 )
actin filament ( GO:0005884 )
mitochondrion ( GO:0005739 )
nucleus ( GO:0005634 )
Molecular Function
-
Medical Subject Headings
Fibroblasts ( D005347 )
Microscopy, Fluorescence ( D008856 )
Autophagosomes (D000071182)
HeLa Cells ( D006367 )
Actin Cytoskeleton ( D008841 )
Time-Lapse Imaging ( D059008 )
Mitochondria ( D008928 )
Cell Nucleus ( D002467 )

Imaging Method

Method involved in biological imaging
structured illumination microscopy
( FBbi:00000332 )
wide-field microscopy
time lapse microscopy
( FBbi:00000249 )

Paper DOI / Paper URL

People
Contact
Katsumasa Fujita
Osaka University
Department of Applied Physics
Laboratory for Nanophotonics
2-1 Yamadaoka, Suita, Osaka 565-0871, Japan
Imaging dataset contributor
Kenta Temma (Osaka University)
Ryosuke Oketani (Osaka University)
Quantitative dataset contributor
-

Image datasets
40
Quantitative datasets
0

Dataset List

Thumbnail
Dataset
Organism
Kind / Links
Homo sapiens , ( NCBITaxon:9606 )
Image data
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Fluorescence images of autophagosomes in living MEFs obtained in SIM mode for single-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
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Fluorescence images of autophagosomes in living MEFs obtained in SPA-SIM mode for single-photon activation
Mus musculus , ( NCBITaxon:10090 )
Image data
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Fluorescence images of autophagosomes in living MEFs obtained in SPIM mode for single-photon activation
Mus musculus , ( NCBITaxon:10090 )
Image data
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Fluorescence images of autophagosomes in living MEFs obtained in wide-field mode for single-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
Time-lapse images of actin filaments of living HeLa cells in SPA-SIM mode for single-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
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Time-lapse images of actin filaments of living HeLa cells in SPIM mode for single-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
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3D rendered images of mitochondria in living HeLa cells with 3DSIM for single-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
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3D rendered images of mitochondria in living HeLa cells with SPASIM for single-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
Time-lapse images of mitochondria of living HeLa cells in SPA-SIM mode for single-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
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Time-lapse images of mitochondria of living HeLa cells in SPIM mode for single-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
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Fluorescence images of mitochondria in fixed HeLa cells in the imaging mode of 3DSIM for single-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
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Fluorescence images of mitochondria in fixed HeLa cells in the imaging mode of SIM for single-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
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Fluorescence images of mitochondria in fixed HeLa cells in the imaging mode of SPA3DSIM
Homo sapiens , ( NCBITaxon:9606 )
Image data
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Fluorescence images of mitochondria in fixed HeLa cells in the imaging mode of SPA-SIM for single-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
Fluorescence images of mitochondria in fixed HeLa cells in the imaging mode of SPIM for single-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
Fluorescence images of mitochondria in fixed HeLa cells in the imaging mode of wide-field for single-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
Fluorescence images of histone H2B in the nucleus of living HeLa cells labeled by rsGamillus-S in 3DSIM mode for two-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
Fluorescence images of histone H2B in the nucleus of living HeLa cells labeled by rsGamillus-S in SIM mode for two-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
Fluorescence images of histone H2B in the nucleus of living HeLa cells labeled by rsGamillus-S in SPA3DSIM mode for two-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
Fluorescence images of histone H2B in the nucleus of living HeLa cells labeled by rsGamillus-S in SPA-SIM mode for two-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
Fluorescence images of histone H2B in the nucleus of living HeLa cells labeled by rsGamillus-S in SPIM mode for two-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
Fluorescence images of histone H2B in the nucleus of living HeLa cells labeled by rsGamillus-S in wide-field mode for two-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
Fluorescence images of spheroid of living HeLa cells labeled by rsGamillus-S in 3DSIM mode for two-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
Fluorescence images of spheroid of living HeLa cells labeled by rsGamillus-S in SPA3DSIM mode for two-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
Fluorescence images of spheroid of living HeLa cells labeled by rsGamillus-S in SPIM mode for two-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
Fluorescence images of spheroid of living HeLa cells labeled by rsGamillus-S in wide-field mode for two-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
The x-y image of mitochondria of living HeLa cells in SPA-SIM mode for single-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
The x-y image of actin filaments of living HeLa cells in 3DSIM mode for two-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
3D-rendered images of actin filaments of living HeLa cells in 3DSIM mode for two-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
3D-rendered images of spheroid of living HeLa cells in SPA-SIM mode for two-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
Fluorescence images of actin filaments in HeLa cell spheroids in 3DSIM mode for two-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
Fluorescence images of actin filaments in HeLa cell spheroids in SPA-SIM mode for two-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
Fluorescence images of actin filaments in HeLa cell spheroids in SPIM mode for two-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
Fluorescence images of actin filaments in HeLa cell spheroids in wide-field mode for two-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
Fluorescence images of nuclei labeled by rsGamillus-S in HeLa cell spheroids in 3DSIM mode for two-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
Fluorescence images of nuclei labeled by rsGamillus-S in HeLa cell spheroids in SPA-SIM mode for two-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
Fluorescence images of nuclei labeled by rsGamillus-S in HeLa cell spheroids in SPIM mode for two-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
Fluorescence images of nuclei labeled by rsGamillus-S in HeLa cell spheroids in wide-field mode for two-photon activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
3D images of mitochondria in living HeLa cells with conventional SIM with single-photon light sheet activation
Homo sapiens , ( NCBITaxon:9606 )
Image data
-
3D images of mitochondria in living HeLa cells with conventional SPA-SIM with single-photon light sheet activation