SSBD:database

331-Shimojo-MouseBrainAnatomicalRegion/D1BN_TM9.5_L

Author reviewed
BDML file for semantic segmentation data of eight anatomical regions (isocortex, olfactory area, hippocampal formation, cerebral nuclei, interbrain, midbrain, hindbrain, and cerebellum) for images of samples obtained by slicing P7 mouse brain (D1BN_TM9.5_L dataset) that was neurogenic-tagged at E9.5 and was visualized for nucleus-localized beta-galactosidase reporter (L)
SSBD:OMERO.gallery (Project) SSBD:OMERO (Project) BDML 4D Viewer
SSBD:downloads
Project
331-Shimojo-MouseBrainAnatomicalRegion
Dataset ID
D1BN_TM9.5_L
Kind
Quantitative data
Title
BDML file for semantic segmentation data of eight anatomical regions (isocortex, olfactory area, hippocampal formation, cerebral nuclei, interbrain, midbrain, hindbrain, and cerebellum) for images of samples obtained by slicing P7 mouse brain (D1BN_TM9.5_L dataset) that was neurogenic-tagged at E9.5 and was visualized for nucleus-localized beta-galactosidase reporter (L)
Description
semantic segmentation data of eight anatomical regions (isocortex, olfactory area, hippocampal formation, cerebral nuclei, interbrain, midbrain, hindbrain, and cerebellum) for images of samples obtained by slicing P7 mouse brain (D1BN_TM9.5_L dataset) that was neurogenic-tagged at E9.5 and was visualized for nucleus-localized beta-galactosidase reporter (L)
File or Folder
D1BN_TM9.5_L_bdml3.0.zip
File Formats
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File Separation Method
coronal sections from anterior to posterior direction
Source
-
X-scale
1.0 micrometer/pixel
Y-scale
1.0 micrometer/pixel
Z-scale
20 micrometer/slice
T-scale
-
Local ID
D1BN_TM9.5_L
Based On
Experiment
BD5
D1BN_TM9.5_L_bd5.h5
dblink
http://ssbd.riken.jp/neurogt/
Organism
Mus musculus ( NCBITaxon:10090 )
Strain
C57BL/6 Neurod1^{CreER}(D1B); Tau^{mGFP-nLacZ}
Cell line
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Biological Process
nervous system development ( GO:0007399 )
Cellular Component
plasma membrane ( GO:0005886 )
neuron projection ( GO:0043005 )
Medical Subject Headings
neurons ( MeSH:D009474 )
axons ( MeSH:D001369 )
brain ( MeSH:D001921 )
mice transgenic ( MeSH:D008822 )
immunohistochemistry ( MeSH:D007150 )
Method involved in biological imaging
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Project gallery
https://ssbd.riken.jp/omero/gallery/show_project/728/
Project
https://ssbd.riken.jp/omero/webclient/?show=project-728
BDML
BDML file for semantic segmentation data of eight anatomical regions (isocortex, olfactory area, hippocampal formation, cerebral nuclei, interbrain, midbrain, hindbrain, and cerebellum) for images of samples obtained by slicing P7 mouse brain (D1BN_TM9.5_L dataset) that was neurogenic-tagged at E9.5 and was visualized for nucleus-localized beta-galactosidase reporter (L)
4D Viewer
https://ssbd.riken.jp/webbd5viewer/viewerBD5.html?project=331-Shimojo-MouseBrainAnatomicalRegion&file=D1BN_TM9.5_L_bd5
downloads
https://ssbd.riken.jp/data/331-Shimojo-MouseBrainAnatomicalRegion/

Sibling records

Image data
D1BN_TM9.5_L
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