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Resources in SSBD:database (metadata v3)
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Resources in SSBD:repository
SSBD:OMERO
SSBD:BFF
Tools
Publications
About
About SSBD
Statistics
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Copyright
Usage
8-Bashar-MouseEmbryo
Author reviewed
SSBD:OMERO.gallery
SSBD:OMERO
SSBD:downloads
Project name
8-Bashar-MouseEmbryo
Release date
2014-10-03
Update date
2018-11-15
Pre-release URL
-
Project title
-
License
CC BY-NC-SA
Method summary
See details in Bashar et al. (2012) PLoS ONE 7, e35550.
PubMed URL
https://www.ncbi.nlm.nih.gov/pubmed/22590505
Kind
Image data
Quantitative data
Organism
Mus musculus
(
NCBITaxon:10090
)
Total
5605 files / 564.1 MB
Image datasets
zipped 1 files / 125.5 MB, raw image 2800 files / 155.8 MB, total 2801 files / 281.4 MB
Quantitative datasets
zipped 1 files / 94.3 KB, raw bdml 2 files / 1.3 MB, total 3 files / 1.4 MB
Image datasets
1
Quantitative datasets
1
Strain
-
Datatype
nuclear positions
Basedon
Experiment
XYZ-scale
XY: 0.385 micrometer/pixel, Z: 0.375 micrometer/slice
T-scale
10 minute for each time interval
dblink
None
External links
None
PDPML
http://ssbd.qbic.riken.jp/data/pdpml/8-Bashar-MouseEmbryo_pdpml1.0.xml
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Biological Process
embryo development (
GO:0009790
)
Cellular Component
nucleus (
GO:0005634
)
People
Contact
Md. Khayrul Bashar
The University of Tokyo
Institute of Industrial Science
Laboratory for Quantitative Biology
Contributors
Md. Khayrul Bashar, Koji Komatsu, Toshihiko Fujimori, Tetsuya J. Kobayashi
OMERO.gallery
https://ssbd.riken.jp/omero/gallery/show_project/9/
OMERO
https://ssbd.riken.jp/omero/webclient/?show=project-9
downloads
https://ssbd.riken.jp/data/8-Bashar-MouseEmbryo/
Dataset List
Thumbnail
Dataset
Organism
Kind / Links
088044_L1
Mus musculus
(
NCBITaxon:10090
)
Image data
omero.gallery
omero
Time-lapse 3D microscopy images about nuclei of mouse embryonic cells
088044_L1
Mus musculus
(
NCBITaxon:10090
)
Quantitative data
BDML
BDML file for quantitative information about nuclei centroids of mouse embryonic cells,quantitative information about nuclei centroids of mouse embryonic cells