SSBD:database

Dataset 8-Bashar-MouseEmbryo/088044_L1

Author reviewed
SSBD:OMERO.gallery (Project) SSBD:OMERO (Project) BDML 4D Viewer
SSBD:downloads
Project name
8-Bashar-MouseEmbryo
Release date
2014-10-03
Update date
2018-11-15
Pre-release URL
None
Project title
None
Contact name
Md. Khayrul Bashar
Organization
The University of Tokyo
Department
Institute of Industrial Science
Laboratory
Laboratory for Quantitative Biology
Address
4-6-1, Komaba, Meguro-ku, Tokyo 153-8505 Japan
License
CC BY-NC-SA
Contributors
Md. Khayrul Bashar, Koji Komatsu, Toshihiko Fujimori, Tetsuya J. Kobayashi
Method summary
See details in Bashar et al. (2012) PLoS ONE 7, e35550.
PubMed URL
https://www.ncbi.nlm.nih.gov/pubmed/22590505
File or Folder
088044_L1
Kind
Image data
Title
BDML file for quantitative information about nuclei centroids of mouse embryonic cells,quantitative information about nuclei centroids of mouse embryonic cells
Description
-
Organism
Mus musculus ( NCBITaxon:10090 )
Strain
None
Datatype
nuclear positions
Basedon
Experiment
LocalID
088044_L1
XYZ-scale
XY: 0.385 micrometer/pixel, Z: 0.375 micrometer/slice
T-scale
10 minute for each time interval
dblink
None
External links
-
Source
None
BDML
None
PDPML
http://ssbd.qbic.riken.jp/data/pdpml/8-Bashar-MouseEmbryo_pdpml1.0.xml
Experiment type
None
Microscope type
None
Acquisition mode
None
Contrast method
None
Microscope model
None
Detector model
None
Objective model
None
Filter set
None
Sample
-
Dye
-
Clearing
-
Note0
-
Biological Process
embryo development ( GO:0009790 )
Cellular Component
nucleus ( GO:0005634 )
Project gallery
https://ssbd.riken.jp/omero/gallery/show_project/9/
Project
https://ssbd.riken.jp/omero/webclient/?show=project-9
Documents
BDML file for quantitative information about nuclei centroids of mouse embryonic cells
4D Viewer
https://ssbd.riken.jp/webbd5viewer/viewerBD5.html?project=8-Bashar-MouseEmbryo&file=088044_L1_bd5

Sibling records

Image data
088044_L1
Time-lapse 3D microscopy images about nuclei of mouse embryonic cells
downloads
https://ssbd.riken.jp/data/8-Bashar-MouseEmbryo/