ssbd-repos-000266

Neuropeptide gene expression atlas in the adult zebrafish brain
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Name
ssbd-repos-000266
URL
DOI

Project metadata

Title
Neuropeptide gene expression atlas in the adult zebrafish brain
Description
Zebrafish is a useful model organism in neuroscience; however, its gene expression atlas in the adult brain is not well developed. In the present study, we examined the expression of 38 neuropeptides (agrp, asip2b, avp, calca, cart2a, cart2b, cart3a, cart3b, cart4, cart5, ccka, cckb, crha, crhb, gal, galp, gnrh2, gnrh3, grp, kiss1, kiss2, npb, npvf, npy, hcrt, oxt, pdyn, penka, penkb, pmch, pmchl, pomca, pomcb, tac1, tac3a, tac3b, vipa, and vipb), GABAergic neuron marker gene mix (gad1a, gad1b, and gad2), and glutamatergic neuron marker gene mix (slc17a6a, slc17a6b, slc17a7a, and slc17a7b) in the adult zebrafish brain using in situ hybridization. Three to five adult male fish were sampled per gene. Sampled brains were PFA-fixed and paraffin-embedded, and serial sections of whole brains were prepared. The entire brain of a zebrafish can be placed on a single glass slide. Each glass slide was subjected to in situ hybridization and scanned using a NanoZoomer HT slide scanner (Hamamatsu Photonics). All of the scan data can be viewed and downloaded from the database at this site.
Submission date
2023-01-31
Release date
2024-06-04
Update date
-
License
Funding information
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File formats
.ndpi files

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Data (repos)
267 files / 108.53 GiB
Bundle (zip)
168 files / 98.76 GiB

Related paper(s)

Persons

Name
Towako Hiraki-Kajiyama
Contact
Name
Yoshihiro Yoshihara
Imaging contributor
Name
Nobuhiko Miyasaka
Imaging contributor
Name
Reiko Ando
Imaging contributor
Name
Noriko Wakisaka
Imaging contributor

Ontology terms

Organism
Danio rerio
Strain
RIKEN Wako
Cell line
-
Molecular function
-
Biological process
-
Cellular component
-
Medical subject heading
-
Biological imaging method
NanoZoomer HT slide scanner

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