No thumbnail

Summary of 42-Hayashi-NeuronalCellDyn


SSBD:database
SSBD:database URL

SSBD:repository
SSBD:repository URL

Title
BDML file for the tracking of an endosome retrogradely or anterogradely transported in the axon of a supracervical ganglion (SCG) neuron in vitro
Description
-
Release date
2019-11-20
Updated date
-
License
CC BY-NC-SA
Kind
Quantitative data based on Experiment
Number of Datasets
198 ( Image datasets: 0, Quantitative data datasets: 198 )
Size of Datasets
87.2 MB ( Image datasets: 0 bytes, Quantitative data datasets: 87.2 MB )

Organism(s)
Rattus norvegicus

Datatype
neuron cell dynamics
Molecular Function (MF)
Biological Process (BP)
axonal transport
Cellular Component (CC)
endosome
Biological Imaging Method
-
XYZ Scale
X: 1 micrometer, Y: NA, Z: NA
T scale
0.0102 second for each time interval

Image Acquisition
Experiment type
TimeLapse
Microscope type
FluorescenceMicroscope
Acquisition mode
WideField
Contrast method
Fluorescence
Microscope model
Olympus IX71
Detector model
Andor LucaS
Objective model
Olympus UPlanFL 100x/1.3
Filter set
Olympus WIG filter set

Related paper(s)

Kumiko Hayashi, Yuta Tsuchizawa, Mitsuhiro Iwaki, Yasushi Okada (2018) Application of the fluctuation theorem for noninvasive force measurement in living neuronal axons., Molecular biology of the cell, Volume 29, Number 25, pp. 3017-3025

Published in 2018 Dec 1 (Electronic publication in Oct. 3, 2018, midnight )

(Abstract) Although its importance is recently widely accepted, force measurement has been difficult in living biological systems, mainly due to the lack of the versatile noninvasive force measurement methods. The fluctuation theorem, which represents the thermodynamic properties of small fluctuating nonequilibrium systems, has been applied to the analysis of the thermodynamic properties of motor proteins in vitro. Here we extend it to the axonal transport (displacement) of endosomes. The distribution of the displacement fluctuation had three or four distinct peaks around multiples of a unit value, which the fluctuation theorem can convert into the drag force exerted on the endosomes. The results demonstrated that a single cargo vesicle is conveyed by one to three or four units of force production.
(MeSH Terms)

Contact
Yasushi Okada , RIKEN , Quantitative Biology Center , Laboratory for Cell Polarity Regulation
Contributors
Kumiko Hayashi, Yuta Tsuchizawa, Mitsuhiro Iwaki, Yasushi Okada

Dataset List of 42-Hayashi-NeuronalCellDyn

Thumbnail
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
Download Images
Thumbnail -
# 1036
Datast ID Fig3_retro
Dataset Kind Quantitative data
Dataset Size 1.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1037
Datast ID Fig4_antero
Dataset Kind Quantitative data
Dataset Size 2.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1038
Datast ID Fig5_retro-1
Dataset Kind Quantitative data
Dataset Size 347.6 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1039
Datast ID Fig5_retro-2
Dataset Kind Quantitative data
Dataset Size 509.7 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1040
Datast ID Fig5_retro-3
Dataset Kind Quantitative data
Dataset Size 488.4 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1041
Datast ID Fig5_retro-4
Dataset Kind Quantitative data
Dataset Size 474.1 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1042
Datast ID Fig5_retro-5
Dataset Kind Quantitative data
Dataset Size 836.8 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1043
Datast ID Fig5_retro-6
Dataset Kind Quantitative data
Dataset Size 507.3 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1044
Datast ID Fig5_retro-7
Dataset Kind Quantitative data
Dataset Size 1.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1045
Datast ID Fig5_retro-8
Dataset Kind Quantitative data
Dataset Size 530.9 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1046
Datast ID Fig5_retro-9
Dataset Kind Quantitative data
Dataset Size 630.8 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1047
Datast ID Fig5_retro-10
Dataset Kind Quantitative data
Dataset Size 493.4 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1048
Datast ID Fig5_retro-11
Dataset Kind Quantitative data
Dataset Size 756.4 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1049
Datast ID Fig5_retro-12
Dataset Kind Quantitative data
Dataset Size 438.8 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1050
Datast ID Fig5_retro-13
Dataset Kind Quantitative data
Dataset Size 347.6 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1051
Datast ID Fig5_retro-14
Dataset Kind Quantitative data
Dataset Size 255.9 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1052
Datast ID Fig5_retro-15
Dataset Kind Quantitative data
Dataset Size 459.6 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1053
Datast ID Fig5_retro-16
Dataset Kind Quantitative data
Dataset Size 333.7 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1054
Datast ID Fig5_retro-17
Dataset Kind Quantitative data
Dataset Size 630.8 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1055
Datast ID Fig5_retro-18
Dataset Kind Quantitative data
Dataset Size 611.3 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1056
Datast ID Fig5_retro-19
Dataset Kind Quantitative data
Dataset Size 834.2 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1057
Datast ID Fig5_retro-20
Dataset Kind Quantitative data
Dataset Size 683.5 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1058
Datast ID Fig5_retro-21
Dataset Kind Quantitative data
Dataset Size 590.1 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1059
Datast ID Fig5_retro-22
Dataset Kind Quantitative data
Dataset Size 443.4 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1060
Datast ID Fig5_retro-23
Dataset Kind Quantitative data
Dataset Size 350.0 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1061
Datast ID Fig5_retro-24
Dataset Kind Quantitative data
Dataset Size 385.9 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1062
Datast ID Fig5_retro-25
Dataset Kind Quantitative data
Dataset Size 879.9 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1063
Datast ID Fig5_retro-26
Dataset Kind Quantitative data
Dataset Size 824.5 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1064
Datast ID Fig5_retro-27
Dataset Kind Quantitative data
Dataset Size 276.9 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1065
Datast ID Fig5_retro-28
Dataset Kind Quantitative data
Dataset Size 493.4 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1066
Datast ID Fig5_retro-29
Dataset Kind Quantitative data
Dataset Size 505.0 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1067
Datast ID Fig5_retro-30
Dataset Kind Quantitative data
Dataset Size 486.1 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1068
Datast ID Fig5_retro-31
Dataset Kind Quantitative data
Dataset Size 403.2 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1069
Datast ID Fig5_retro-32
Dataset Kind Quantitative data
Dataset Size 459.6 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1070
Datast ID Fig5_retro-33
Dataset Kind Quantitative data
Dataset Size 495.7 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1071
Datast ID Fig5_retro-34
Dataset Kind Quantitative data
Dataset Size 564.2 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1072
Datast ID Fig5_retro-35
Dataset Kind Quantitative data
Dataset Size 367.1 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1073
Datast ID Fig5_retro-36
Dataset Kind Quantitative data
Dataset Size 573.8 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1074
Datast ID Fig5_retro-37
Dataset Kind Quantitative data
Dataset Size 646.9 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1075
Datast ID Fig5_retro-38
Dataset Kind Quantitative data
Dataset Size 576.1 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1076
Datast ID Fig5_retro-39
Dataset Kind Quantitative data
Dataset Size 699.6 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1077
Datast ID Fig5_retro-40
Dataset Kind Quantitative data
Dataset Size 613.7 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1078
Datast ID Fig5_retro-41
Dataset Kind Quantitative data
Dataset Size 573.8 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1079
Datast ID Fig5_retro-42
Dataset Kind Quantitative data
Dataset Size 542.9 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1080
Datast ID Fig5_retro-43
Dataset Kind Quantitative data
Dataset Size 509.7 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1081
Datast ID Fig5_retro-44
Dataset Kind Quantitative data
Dataset Size 533.3 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1082
Datast ID Fig5_retro-45
Dataset Kind Quantitative data
Dataset Size 486.1 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1083
Datast ID Fig5_retro-46
Dataset Kind Quantitative data
Dataset Size 576.1 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1084
Datast ID Fig5_retro-47
Dataset Kind Quantitative data
Dataset Size 267.6 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail -
# 1085
Datast ID Fig5_retro-48
Dataset Kind Quantitative data
Dataset Size 946.4 KB
4D view
SSBD:OMERO
Download BDML
Download Image data