Summary of 333-Tsugawa-gravitropism

SSBD:database
SSBD:database URL
Title
Shoot gravitropism of wild type and myosin xif xik mutant Arabidopsis
Description
Gravitropism is the plant organ bending in response to gravity, while a straightening mechanism prevents bending beyond the gravitropic set-point angle. The promotion and prevention of bending occur simultaneously around the inflorescence stem tip. How these two opposing forces work together and what part of the stem they affect are unknown. To understand the mechanical forces involved, authors rotated wild type and organ-straightening-deficient mutant (myosin xif xik) Arabidopsis plants to a horizontal position to initiate bending. The mutant stems started to bend before the wild-type stems, which led them to hypothesize that the force preventing bending was weaker in mutant.
Release date
2025-04-21
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
22 ( Image datasets: 22, Quantitative data datasets: 0 )
Size of Datasets
1.1 GB ( Image datasets: 1.1 GB, Quantitative data datasets: 0 bytes )

Organism(s)
Arabidopsis thaliana
Strain(s)
Col-0

Datatype
-
Molecular Function (MF)
Biological Process (BP)
gravitropism
Cellular Component (CC)
Biological Imaging Method
macroscopy
X scale
0.146 micrometer/pixel, 0.151 micrometer/pixel, 0.144 micrometer/pixel, 0.154 micrometer/pixel, 0.137 micrometer/pixel, 0.150 micrometer/pixel, 0.147 micrometer/pixel, 0.152 micrometer/pixel, 0.148 micrometer/pixel, 0.149 micrometer/pixel
Y scale
0.146 micrometer/pixel, 0.151 micrometer/pixel, 0.144 micrometer/pixel, 0.154 micrometer/pixel, 0.137 micrometer/pixel, 0.150 micrometer/pixel, 0.147 micrometer/pixel, 0.152 micrometer/pixel, 0.148 micrometer/pixel, 0.149 micrometer/pixel
Z scale
-
T scale
10 minutes

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Satoru Tsugawa, Yuzuki Miyake, Keishi Okamoto, Masatsugu Toyota, Hiroki Yagi, Miyo Terao Morita, Ikuko Hara-Nishimura, Taku Demura, Haruko Ueda (2023) Shoot gravitropism and organ straightening cooperate to arrive at a mechanically favorable shape in Arabidopsis., Scientific reports, Volume 13, Number 1, pp. 11165

Published in 2023 Jul 17 (Electronic publication in July 17, 2023, midnight )

(Abstract) Gravitropism is the plant organ bending in response to gravity, while a straightening mechanism prevents bending beyond the gravitropic set-point angle. The promotion and prevention of bending occur simultaneously around the inflorescence stem tip. How these two opposing forces work together and what part of the stem they affect are unknown. To understand the mechanical forces involved, we rotated wild type and organ-straightening-deficient mutant (myosin xif xik) Arabidopsis plants to a horizontal position to initiate bending. The mutant stems started to bend before the wild-type stems, which led us to hypothesize that the force preventing bending was weaker in mutant. We modeled the wild-type and mutant stems as elastic rods, and evaluated two parameters: an organ-angle-dependent gravitropic-responsive parameter (beta) and an organ-curvature-dependent proprioceptive-responsive parameter (gamma). Our model showed that these two parameters were lower in mutant than in wild type, implying that, unexpectedly, both promotion and prevention of bending are weak in mutant. Subsequently, finite element method simulations revealed that the compressive stress in the middle of the stem was significantly lower in wild type than in mutant. The results of this study show that myosin-XIk-and-XIf-dependent organ straightening adjusts the stress distribution to achieve a mechanically favorable shape.

Contact
Satoru Tsugawa , Akita Prefectural University , Department of Mechanical Engineering , Department of Mechanical Engineering
Contributors


Dataset List of 333-Tsugawa-gravitropism

#
Dataset ID
Kind
Size
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SSBD:OMERO
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# 12671
Dataset Kind Image data
Dataset Size 51.2 MB
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SSBD:OMERO
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# 12672
Dataset Kind Image data
Dataset Size 51.8 MB
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SSBD:OMERO
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# 12673
Dataset Kind Image data
Dataset Size 18.9 MB
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SSBD:OMERO
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# 12674
Dataset Kind Image data
Dataset Size 91.3 MB
4D view
SSBD:OMERO
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# 12675
Dataset Kind Image data
Dataset Size 23.3 MB
4D view
SSBD:OMERO
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# 12676
Dataset Kind Image data
Dataset Size 150.7 MB
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SSBD:OMERO
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# 12677
Dataset Kind Image data
Dataset Size 22.7 MB
4D view
SSBD:OMERO
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# 12678
Dataset Kind Image data
Dataset Size 29.8 MB
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SSBD:OMERO
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# 12679
Dataset Kind Image data
Dataset Size 95.0 MB
4D view
SSBD:OMERO
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Download Image data

# 12680
Dataset Kind Image data
Dataset Size 33.0 MB
4D view
SSBD:OMERO
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# 12681
Dataset Kind Image data
Dataset Size 103.0 MB
4D view
SSBD:OMERO
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# 12682
Dataset Kind Image data
Dataset Size 49.0 MB
4D view
SSBD:OMERO
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# 12683
Dataset Kind Image data
Dataset Size 52.1 MB
4D view
SSBD:OMERO
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# 12684
Dataset Kind Image data
Dataset Size 26.2 MB
4D view
SSBD:OMERO
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Download Image data

# 12685
Dataset Kind Image data
Dataset Size 18.2 MB
4D view
SSBD:OMERO
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# 12686
Dataset Kind Image data
Dataset Size 22.1 MB
4D view
SSBD:OMERO
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# 12687
Dataset Kind Image data
Dataset Size 33.7 MB
4D view
SSBD:OMERO
Download BDML
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# 12688
Dataset Kind Image data
Dataset Size 28.2 MB
4D view
SSBD:OMERO
Download BDML
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# 12689
Dataset Kind Image data
Dataset Size 29.7 MB
4D view
SSBD:OMERO
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# 12690
Dataset Kind Image data
Dataset Size 110.5 MB
4D view
SSBD:OMERO
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# 12691
Dataset Kind Image data
Dataset Size 26.0 MB
4D view
SSBD:OMERO
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# 12692
Dataset Kind Image data
Dataset Size 25.1 MB
4D view
SSBD:OMERO
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