Summary of 329-Nelson-Chemotaxis 
        
     
    
    
    
    
    
    
    
    
        
    
    
    
    
    
    
    
        
            Title
        
        
            
            Ammonium chemotaxis
of Chlamydomonas reinhardtii
            
        
     
    
    
    
    
    
    
    
    
    
    
    
    
        
            Kind
        
        
            Image data
            
            based on Experiment
            
        
     
    
    
        
            Number of Datasets
        
        
            33
            ( Image datasets: 33,
              Quantitative data datasets: 0 )
        
     
    
    
        
            Size of Datasets
        
        
            463.9 MB
            ( Image datasets: 463.9 MB,
              Quantitative data datasets: 0 bytes )
        
     
    
    
    
        
            Organism(s)
        
        
            Chlamydomonas reinhardtii 
        
     
    
    
        
            Strain(s)
        
        
            CC-124, CC-125, CC-2894, CC-4042, CC-125, CC-1036, CC-613, CC-4316, CC-124
        
     
    
    
    
    
    
    
    
    
    
    
    
    
    
        
            Biological Process (BP)
        
        
            
            cell chemotaxis
            
        
     
    
    
    
    
        
            Biological Imaging Method
        
        
            
            macroscopy, microscopy
            
        
     
    
    
    
    
    
    
    
    
        
            T scale
        
        
            
            2 seconds, 5 minutes, NA
            
        
     
    
    
    
        
            Image Acquisition
        
        
            Experiment type
        
        
            
            -
            
        
        
            Microscope type
        
        
            
            -
            
        
        
            Acquisition mode
        
        
            
            -
            
        
        
            Contrast method
        
        
            
            -
            
        
        
            Microscope model
        
        
            
            -
            
        
        
            Detector model
        
        
            
            -
            
        
        
            Objective model
        
        
            
            -
            
        
        
            Filter set
        
        
            
            -
            
        
     
    
    
    
    
        
            Related paper(s)
        
        
            
                Gabela Nelson, Alexis Strain, Atsuko Isu, Alireza Rahnama, Ken-Ichi Wakabayashi, Adam T Melvin, Naohiro Kato (2023) Cells collectively migrate during ammonium chemotaxis in Chlamydomonas reinhardtii., Scientific reports, Volume 13, Number 1, pp. 10781
            
            
                Published in 2023 Jul 4
                
                (Electronic publication in July 4, 2023, midnight )
                
            
            
            
                (Abstract) The mechanisms governing chemotaxis in Chlamydomonas reinhardtii are largely unknown compared to those regulating phototaxis despite equal importance on the migratory response in the ciliated microalga. To study chemotaxis, we made a simple modification to a conventional Petri dish assay. Using the assay, a novel mechanism governing Chlamydomonas ammonium chemotaxis was revealed. First, we found that light exposure enhances the chemotactic response of wild-type Chlamydomonas strains, yet phototaxis-incompetent mutant strains, eye3-2 and ptx1, exhibit normal chemotaxis. This suggests that Chlamydomonas transduces the light signal pathway in chemotaxis differently from that in phototaxis. Second, we found that Chlamydomonas collectively migrate during chemotaxis but not phototaxis. Collective migration during chemotaxis is not clearly observed when the assay is conducted in the dark. Third, the Chlamydomonas strain CC-124 carrying agg1(-), the AGGREGATE1 gene (AGG1) null mutation, exhibited a more robust collective migratory response than strains carrying the wild-type AGG1 gene. The expression of a recombinant AGG1 protein in the CC-124 strain suppressed this collective migration during chemotaxis. Altogether, these findings suggest a unique mechanism; ammonium chemotaxis in Chlamydomonas is mainly driven by collective cell migration. Furthermore, it is proposed that collective migration is enhanced by light and suppressed by the AGG1 protein.
             
            
         
     
    
    
    
    
        
            Contact
        
        
            Naohiro Kato
            
            , Louisiana State University
            
            
            , Department of Biological Sciences
            
            
            , Department of Biological Sciences
            
        
     
    
    
        
            Contributors
        
        
            Gabela Nelson, Alexis Strain
        
     
    
    
    
        
        
            SSBD:OMERO.gallery Project 
        
        
            SSBD:OMERO Project 
        
        
     
    
    
    
    
    
        
            
Dataset List of 329-Nelson-Chemotaxis 
        
     
    
        
            #
        
        
            Dataset ID
        
        
            Kind
        
        
            Size
        
        
            4D View
        
        
            SSBD:OMERO
        
        
            Download BDML
        
        
            Download Images
        
     
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            9.9 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (9.9 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            13.7 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (13.6 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            12.1 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (12.1 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            993.5 KB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (716.6 KB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            22.2 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (22.2 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            25.1 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (25.1 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            22.4 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (22.4 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            15.5 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (15.5 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            15.5 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (15.5 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            15.1 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (15.1 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            16.9 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (16.9 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            15.4 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (15.4 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            18.3 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (18.3 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            13.2 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (13.2 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            12.2 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (12.2 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            11.5 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (11.5 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            13.1 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (13.0 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            10.2 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (10.2 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            10.5 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (10.5 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            19.9 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (19.9 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            18.8 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (18.8 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            19.6 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (19.6 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            13.1 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (13.0 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            10.2 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (10.2 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            10.5 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (10.5 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            9.8 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (9.8 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            12.5 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (12.4 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            11.0 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (10.9 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            12.7 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (12.7 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            16.0 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (15.9 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            17.0 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (15.9 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            16.3 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (15.9 MB) 
            
        
     
    
    
    
        
        
        
            Dataset Kind 
            Image data
        
        
            Dataset Size 
            2.5 MB
        
        
            4D view 
            
            4D View 
            
        
        
            SSBD:OMERO 
            
            gallery 
            index 
            
        
        
            Download BDML 
            
            zip 
            
        
        
            Download Image data 
            
            zip (2.1 MB)