Summary of 329-Nelson-Chemotaxis


SSBD:database
SSBD:database URL

SSBD:repository
SSBD:repository URL

Title
Ammonium chemotaxis of Chlamydomonas reinhardtii
Description
-
Release date
2025-01-31
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
33 ( Image datasets: 33, Quantitative data datasets: 0 )
Size of Datasets
463.9 MB ( Image datasets: 463.9 MB, Quantitative data datasets: 0 bytes )

Organism(s)
Chlamydomonas reinhardtii
Strain(s)
CC-124, CC-125, CC-2894, CC-4042, CC-125, CC-1036, CC-613, CC-4316, CC-124

Datatype
-
Molecular Function (MF)
Biological Process (BP)
cell chemotaxis
Cellular Component (CC)
Biological Imaging Method
macroscopy, microscopy
X scale
-
Y scale
-
Z scale
-
T scale
2 seconds, 5 minutes, NA

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Gabela Nelson, Alexis Strain, Atsuko Isu, Alireza Rahnama, Ken-Ichi Wakabayashi, Adam T Melvin, Naohiro Kato (2023) Cells collectively migrate during ammonium chemotaxis in Chlamydomonas reinhardtii., Scientific reports, Volume 13, Number 1, pp. 10781

Published in 2023 Jul 4 (Electronic publication in July 4, 2023, midnight )

(Abstract) The mechanisms governing chemotaxis in Chlamydomonas reinhardtii are largely unknown compared to those regulating phototaxis despite equal importance on the migratory response in the ciliated microalga. To study chemotaxis, we made a simple modification to a conventional Petri dish assay. Using the assay, a novel mechanism governing Chlamydomonas ammonium chemotaxis was revealed. First, we found that light exposure enhances the chemotactic response of wild-type Chlamydomonas strains, yet phototaxis-incompetent mutant strains, eye3-2 and ptx1, exhibit normal chemotaxis. This suggests that Chlamydomonas transduces the light signal pathway in chemotaxis differently from that in phototaxis. Second, we found that Chlamydomonas collectively migrate during chemotaxis but not phototaxis. Collective migration during chemotaxis is not clearly observed when the assay is conducted in the dark. Third, the Chlamydomonas strain CC-124 carrying agg1(-), the AGGREGATE1 gene (AGG1) null mutation, exhibited a more robust collective migratory response than strains carrying the wild-type AGG1 gene. The expression of a recombinant AGG1 protein in the CC-124 strain suppressed this collective migration during chemotaxis. Altogether, these findings suggest a unique mechanism; ammonium chemotaxis in Chlamydomonas is mainly driven by collective cell migration. Furthermore, it is proposed that collective migration is enhanced by light and suppressed by the AGG1 protein.

Contact
Naohiro Kato , Louisiana State University , Department of Biological Sciences , Department of Biological Sciences
Contributors
Gabela Nelson, Alexis Strain

Dataset List of 329-Nelson-Chemotaxis

Thumbnail
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
Download Images
Thumbnail Thumbnail for dataset Fig1A_chemotaxis_1
# 11999
Datast ID Fig1A_chemotaxis_1
Dataset Kind Image data
Dataset Size 9.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig1A_chemotaxis_2
# 12000
Datast ID Fig1A_chemotaxis_2
Dataset Kind Image data
Dataset Size 13.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig1A_chemotaxis_3
# 12001
Datast ID Fig1A_chemotaxis_3
Dataset Kind Image data
Dataset Size 12.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset MovieS1_chemotaxis
# 12002
Datast ID MovieS1_chemotaxis
Dataset Kind Image data
Dataset Size 993.5 KB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset SupplFig6_chemotaxis_NoAcetate_1
# 12003
Dataset Kind Image data
Dataset Size 22.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset SupplFig6_chemotaxis_NoAcetate_2
# 12004
Dataset Kind Image data
Dataset Size 25.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset SupplFig6_chemotaxis_NoAcetate_3
# 12005
Dataset Kind Image data
Dataset Size 22.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset SupplFig7_chemo_pf14_1
# 12006
Dataset Kind Image data
Dataset Size 15.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset SupplFig7_chemo_pf14_2
# 12007
Dataset Kind Image data
Dataset Size 15.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset SupplFig7_chemo_pf14_3
# 12008
Dataset Kind Image data
Dataset Size 15.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset SupplFig7_chemo_pf18_1
# 12009
Dataset Kind Image data
Dataset Size 16.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset SupplFig7_chemo_pf18_2
# 12010
Dataset Kind Image data
Dataset Size 15.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset SupplFig7_chemo_pf18_3
# 12011
Dataset Kind Image data
Dataset Size 18.3 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset SupplFig7_chemo_eye3-2_1
# 12012
Dataset Kind Image data
Dataset Size 13.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset SupplFig7_chemo_eye3-2_2
# 12013
Dataset Kind Image data
Dataset Size 12.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset SupplFig7_chemo_eye3-2_3
# 12014
Dataset Kind Image data
Dataset Size 11.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset SupplFig7_chemo_ptx1_1
# 12015
Dataset Kind Image data
Dataset Size 13.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset SupplFig7_chemo_ptx1_2
# 12016
Dataset Kind Image data
Dataset Size 10.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset SupplFig7_chemo_ptx1_3
# 12017
Dataset Kind Image data
Dataset Size 10.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset SupplFig7_chemo_amt4_1
# 12018
Dataset Kind Image data
Dataset Size 19.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset SupplFig7_chemo_amt4_2
# 12019
Dataset Kind Image data
Dataset Size 18.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset SupplFig7_chemo_amt4_3
# 12020
Dataset Kind Image data
Dataset Size 19.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset SupplFig7_chemo_CC125_1
# 12021
Dataset Kind Image data
Dataset Size 13.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset SupplFig7_chemo_CC125_2
# 12022
Dataset Kind Image data
Dataset Size 10.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset SupplFig7_chemo_CC125_3
# 12023
Dataset Kind Image data
Dataset Size 10.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset MovieS2_migrate
# 12024
Datast ID MovieS2_migrate
Dataset Kind Image data
Dataset Size 9.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset SupplFig9_LowDensity_1
# 12025
Dataset Kind Image data
Dataset Size 12.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset SupplFig9_LowDensity_2
# 12026
Dataset Kind Image data
Dataset Size 11.0 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset SupplFig9_LowDensity_3
# 12027
Dataset Kind Image data
Dataset Size 12.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig5_chemo_transgenic_1
# 12028
Dataset Kind Image data
Dataset Size 16.0 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig5_chemo_transgenic_2
# 12029
Dataset Kind Image data
Dataset Size 17.0 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig5_chemo_transgenic_3
# 12030
Dataset Kind Image data
Dataset Size 16.3 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset MovieS3_transgenic
# 12031
Datast ID MovieS3_transgenic
Dataset Kind Image data
Dataset Size 2.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data