Summary of 29-Ke-SeeDB2
SSBD:database
SSBD:database URL
SSBD:repository
SSBD:repository URL
Title
-
Description
-
Release date
2017-10-03
Updated date
2018-11-15
License
CC BY
Kind
Image data
based on Experiment
Number of Datasets
58
( Image datasets: 58,
Quantitative data datasets: 0 )
Size of Datasets
30.2 GB
( Image datasets: 30.2 GB,
Quantitative data datasets: 0 bytes )
Organism(s)
Drosophila melanogaster, Homo sapiens, Mus musculus
Strain(s)
HEK293T
Gene symbol(s)
Thy1
Protein name(s)
H2B, membrane, mitochondria, nucleus
Protein tag(s)
EGFP, YFP
Reporter(s)
DAPI, MitoTracker, anti-alpha-tubulin, anti-kinetochore
Datatype
neuron structure
Molecular Function (MF)
Biological Process (BP)
-
Cellular Component (CC)
-
Biological Imaging Method
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XYZ Scale
XY: 0.025 micrometer/pixel, Z: 0.109 micrometer/slice, XY: 1.137 micrometer/pixel, Z: 0.786 micrometer/slice, XY: 0.994 micrometer/pixel, Z: 5.0 micrometer/slice, XY: 0.079 micrometer/pixel, Z: 0.4 micrometer/slice, XY: 1.590 micrometer/pixel, Z: 40 micrometer/slice, XY: 0.043 micrometer/pixel, Z: 0.25 micrometer/slice, XY: 0.043 micrometer/pixel, Z: 0.18 micrometer/slice, XY: 0.200 micrometer/pixel, Z: 0.999 micrometer/slice, XY: 0.041 micrometer/pixel, Z: 0.167 micrometer/slice, XY: 0.043 micrometer/pixel, Z: 0.100 micrometer/slice, XY: 1.435 micrometer/pixel, Z: 1.999 micrometer/slice, XY: 0.200 micrometer/pixel, Z: 0.500 micrometer/slice, XY: 0.041 micrometer/pixel, Z: 0.25 micrometer/slice
T scale
-
Image Acquisition
Experiment type
Other
Microscope type
ConfocalMicroscope
Acquisition mode
LaserScanningConfocalMicroscopy
Contrast method
Fluorescence
Microscope model
Olympus FV-OSR super-resolution system, Olympus FV1000MPE (two-photon), Carl Zeiss ELYRA PS.1 (SR-SIM), Olympus FV1000MPE (confocal), Carl Zeiss Airyscan super-resolution, Leica TCS SP8 DLS (light-sheet)
Detector model
EM-CCD, GaAsP, Airyscan, digital CMOS
Objective model
Olympus UPLSAPO 10x/0.3 W, customized DLS lens, Carl Zeiss Plan-Apochromat 63x/1.4 O DIC M27, Olympus UPLSAPO 63x/1.4 O, Leica HC PL Apo 63x/1.3 glycerol, Olympus XLSLPLN25XGMP 25x/0.9 multi, Carl Zeiss alpha Plan-Apochromat 100x/1.46 O, Olympus UPLSAPO 100x/1.4 O, Olympus UPLSAPO 63x/1.3 glycerol, Carl Zeiss C-Apochromat 40x/1.2 W Korr M27
Filter set
-
Related paper(s)
Contact
Takeshi Imai
, RIKEN
, Center for Developmental Biology
, Laboratory for Sensory Circuit Formation
Contributors
Meng-Tsen Ke, Yasuhiro Nakai, Satoshi Fujimoto, Rie Takayama, Shuhei Yoshida, Tomoya S. Kitajima, Makoto Sato, Takeshi Imai
Dataset List of 29-Ke-SeeDB2
Thumbnail
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
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Thumbnail
#
958
Datast ID
Fig7A_SeeDB2G
Dataset Kind
Image data
Dataset Size
542.0 MB
4D view
SSBD:OMERO
Download BDML
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Thumbnail
#
959
Datast ID
Fig7B_SeeDB2G
Dataset Kind
Image data
Dataset Size
4.8 GB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail
#
960
Datast ID
Fig7D-G_SeeDB2G
Dataset Kind
Image data
Dataset Size
150.2 MB
4D view
SSBD:OMERO
Download BDML
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Thumbnail
#
961
Datast ID
FigS3A_MovieS1
Dataset Kind
Image data
Dataset Size
3.4 GB
4D view
SSBD:OMERO
Download BDML
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Thumbnail
#
962
Datast ID
FigS3B_R26-H2B-EGFP
Dataset Kind
Image data
Dataset Size
1.4 GB
4D view
SSBD:OMERO
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Thumbnail
#
963
Datast ID
FigS3C_I7-IRES-ECFP
Dataset Kind
Image data
Dataset Size
3.3 GB
4D view
SSBD:OMERO
Download BDML
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Thumbnail
#
964
Datast ID
FigS3D_intestine
Dataset Kind
Image data
Dataset Size
41.9 MB
4D view
SSBD:OMERO
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Thumbnail
#
965
Datast ID
FigS3D_liver
Dataset Kind
Image data
Dataset Size
27.1 MB
4D view
SSBD:OMERO
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Download Image data