SSBD:database

Thumbnail for 29-Ke-SeeDB2

Summary of 29-Ke-SeeDB2

SSBD:database
29-Ke-SeeDB2
SSBD:database URL
https://ssbd.riken.jp/database/29-Ke-SeeDB2/
SSBD:repository
ssbd-repos-000029
SSBD:repository URL
https://ssbd.riken.jp/repository/29/
Title
-
Description
-
Release date
2017-10-03
Updated date
2018-11-15
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
58 ( Image datasets: 58, Quantitative data datasets: 0 )
Size of Datasets
30.2 GB ( Image datasets: 30.2 GB, Quantitative data datasets: 0 bytes )
Organism(s)
Drosophila melanogaster, Homo sapiens, Mus musculus
Strain(s)
HEK293T
Gene symbol(s)
Thy1
Protein name(s)
H2B, membrane, mitochondria, nucleus
Protein tag(s)
EGFP, YFP
Reporter(s)
DAPI, MitoTracker, anti-alpha-tubulin, anti-kinetochore
Datatype
neuron structure
Molecular Function (MF)
Biological Process (BP)
-
Cellular Component (CC)
-
Biological Imaging Method
-
XYZ Scale
XY: 0.025 micrometer/pixel, Z: 0.109 micrometer/slice, XY: 1.137 micrometer/pixel, Z: 0.786 micrometer/slice, XY: 0.994 micrometer/pixel, Z: 5.0 micrometer/slice, XY: 0.079 micrometer/pixel, Z: 0.4 micrometer/slice, XY: 1.590 micrometer/pixel, Z: 40 micrometer/slice, XY: 0.043 micrometer/pixel, Z: 0.25 micrometer/slice, XY: 0.043 micrometer/pixel, Z: 0.18 micrometer/slice, XY: 0.200 micrometer/pixel, Z: 0.999 micrometer/slice, XY: 0.041 micrometer/pixel, Z: 0.167 micrometer/slice, XY: 0.043 micrometer/pixel, Z: 0.100 micrometer/slice, XY: 1.435 micrometer/pixel, Z: 1.999 micrometer/slice, XY: 0.200 micrometer/pixel, Z: 0.500 micrometer/slice, XY: 0.041 micrometer/pixel, Z: 0.25 micrometer/slice
T scale
-
Image Acquisition
Experiment type
Other
Microscope type
ConfocalMicroscope
Acquisition mode
LaserScanningConfocalMicroscopy
Contrast method
Fluorescence
Microscope model
Olympus FV-OSR super-resolution system, Olympus FV1000MPE (two-photon), Carl Zeiss ELYRA PS.1 (SR-SIM), Olympus FV1000MPE (confocal), Carl Zeiss Airyscan super-resolution, Leica TCS SP8 DLS (light-sheet)
Detector model
EM-CCD, GaAsP, Airyscan, digital CMOS
Objective model
Olympus UPLSAPO 10x/0.3 W, customized DLS lens, Carl Zeiss Plan-Apochromat 63x/1.4 O DIC M27, Olympus UPLSAPO 63x/1.4 O, Leica HC PL Apo 63x/1.3 glycerol, Olympus XLSLPLN25XGMP 25x/0.9 multi, Carl Zeiss alpha Plan-Apochromat 100x/1.46 O, Olympus UPLSAPO 100x/1.4 O, Olympus UPLSAPO 63x/1.3 glycerol, Carl Zeiss C-Apochromat 40x/1.2 W Korr M27
Filter set
-
Related paper(s)
Contact
Takeshi Imai , RIKEN , Center for Developmental Biology , Laboratory for Sensory Circuit Formation
Contributors
Meng-Tsen Ke, Yasuhiro Nakai, Satoshi Fujimoto, Rie Takayama, Shuhei Yoshida, Tomoya S. Kitajima, Makoto Sato, Takeshi Imai

Dataset List of 29-Ke-SeeDB2

Thumbnail
#
Dataset ID
Kind
Size
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2F_CA1_Thy1-YFP-H
# 908
Datast ID Fig2F_CA1_Thy1-YFP-H
Dataset Kind Image data
Dataset Size 2.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3E_HEK293T_PBS
# 909
Datast ID Fig3E_HEK293T_PBS
Dataset Kind Image data
Dataset Size 764.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3E_HEK293T_SeeDB2S
# 910
Datast ID Fig3E_HEK293T_SeeDB2S
Dataset Kind Image data
Dataset Size 549.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3F_MovieS2
# 911
Datast ID Fig3F_MovieS2
Dataset Kind Image data
Dataset Size 329.4 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3F_MovieS2_SeeDB2S
# 912
Datast ID Fig3F_MovieS2_SeeDB2S
Dataset Kind Image data
Dataset Size 600.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5_SeeDB2S
# 913
Datast ID Fig5_SeeDB2S
Dataset Kind Image data
Dataset Size 1.4 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell15_1
# 914
Datast ID Fig6_NR1_KO_cell15_1
Dataset Kind Image data
Dataset Size 97.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell15_2
# 915
Datast ID Fig6_NR1_KO_cell15_2
Dataset Kind Image data
Dataset Size 238.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell15_3
# 916
Datast ID Fig6_NR1_KO_cell15_3
Dataset Kind Image data
Dataset Size 98.8 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell15_4
# 917
Datast ID Fig6_NR1_KO_cell15_4
Dataset Kind Image data
Dataset Size 129.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell18_1
# 918
Datast ID Fig6_NR1_KO_cell18_1
Dataset Kind Image data
Dataset Size 211.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell18_2
# 919
Datast ID Fig6_NR1_KO_cell18_2
Dataset Kind Image data
Dataset Size 240.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell18_3
# 920
Datast ID Fig6_NR1_KO_cell18_3
Dataset Kind Image data
Dataset Size 110.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell18_4
# 921
Datast ID Fig6_NR1_KO_cell18_4
Dataset Kind Image data
Dataset Size 257.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell19_1
# 922
Datast ID Fig6_NR1_KO_cell19_1
Dataset Kind Image data
Dataset Size 215.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell19_2
# 923
Datast ID Fig6_NR1_KO_cell19_2
Dataset Kind Image data
Dataset Size 174.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell19_3
# 924
Datast ID Fig6_NR1_KO_cell19_3
Dataset Kind Image data
Dataset Size 176.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell19_4
# 925
Datast ID Fig6_NR1_KO_cell19_4
Dataset Kind Image data
Dataset Size 974.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell19_5
# 926
Datast ID Fig6_NR1_KO_cell19_5
Dataset Kind Image data
Dataset Size 214.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell19_6
# 927
Datast ID Fig6_NR1_KO_cell19_6
Dataset Kind Image data
Dataset Size 353.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell19_7
# 928
Datast ID Fig6_NR1_KO_cell19_7
Dataset Kind Image data
Dataset Size 444.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell34_1
# 929
Datast ID Fig6_NR1_KO_cell34_1
Dataset Kind Image data
Dataset Size 273.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell34_2
# 930
Datast ID Fig6_NR1_KO_cell34_2
Dataset Kind Image data
Dataset Size 114.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell34_3
# 931
Datast ID Fig6_NR1_KO_cell34_3
Dataset Kind Image data
Dataset Size 256.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell34_4
# 932
Datast ID Fig6_NR1_KO_cell34_4
Dataset Kind Image data
Dataset Size 176.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell34_5
# 933
Datast ID Fig6_NR1_KO_cell34_5
Dataset Kind Image data
Dataset Size 259.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell35_1
# 934
Datast ID Fig6_NR1_KO_cell35_1
Dataset Kind Image data
Dataset Size 151.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell35_2
# 935
Datast ID Fig6_NR1_KO_cell35_2
Dataset Kind Image data
Dataset Size 246.4 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell35_3
# 936
Datast ID Fig6_NR1_KO_cell35_3
Dataset Kind Image data
Dataset Size 182.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell35_4
# 937
Datast ID Fig6_NR1_KO_cell35_4
Dataset Kind Image data
Dataset Size 44.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell35_5
# 938
Datast ID Fig6_NR1_KO_cell35_5
Dataset Kind Image data
Dataset Size 77.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell36_1
# 939
Datast ID Fig6_NR1_KO_cell36_1
Dataset Kind Image data
Dataset Size 322.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell36_2
# 940
Datast ID Fig6_NR1_KO_cell36_2
Dataset Kind Image data
Dataset Size 521.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell36_3
# 941
Datast ID Fig6_NR1_KO_cell36_3
Dataset Kind Image data
Dataset Size 248.8 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_NR1_KO_cell36_4
# 942
Datast ID Fig6_NR1_KO_cell36_4
Dataset Kind Image data
Dataset Size 117.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_WT_cell2_1
# 943
Datast ID Fig6_WT_cell2_1
Dataset Kind Image data
Dataset Size 307.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_WT_cell2_2
# 944
Datast ID Fig6_WT_cell2_2
Dataset Kind Image data
Dataset Size 167.8 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_WT_cell2_3
# 945
Datast ID Fig6_WT_cell2_3
Dataset Kind Image data
Dataset Size 323.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_WT_cell2_4
# 946
Datast ID Fig6_WT_cell2_4
Dataset Kind Image data
Dataset Size 293.1 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_WT_cell3_1
# 947
Datast ID Fig6_WT_cell3_1
Dataset Kind Image data
Dataset Size 210.3 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_WT_cell3_2
# 948
Datast ID Fig6_WT_cell3_2
Dataset Kind Image data
Dataset Size 201.4 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_WT_cell3_3
# 949
Datast ID Fig6_WT_cell3_3
Dataset Kind Image data
Dataset Size 206.1 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_WT_cell5_1
# 950
Datast ID Fig6_WT_cell5_1
Dataset Kind Image data
Dataset Size 500.9 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_WT_cell5_2
# 951
Datast ID Fig6_WT_cell5_2
Dataset Kind Image data
Dataset Size 119.1 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_WT_cell5_3
# 952
Datast ID Fig6_WT_cell5_3
Dataset Kind Image data
Dataset Size 65.6 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_WT_cell5_4
# 953
Datast ID Fig6_WT_cell5_4
Dataset Kind Image data
Dataset Size 247.6 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_WT_cell5_5
# 954
Datast ID Fig6_WT_cell5_5
Dataset Kind Image data
Dataset Size 190.1 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_WT_cell5_6
# 955
Datast ID Fig6_WT_cell5_6
Dataset Kind Image data
Dataset Size 126.7 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6_WT_cell5_7
# 956
Datast ID Fig6_WT_cell5_7
Dataset Kind Image data
Dataset Size 65.5 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig7A_vectasheld
# 957
Datast ID Fig7A_vectasheld
Dataset Kind Image data
Dataset Size 468.0 MB
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