SSBD:database

Thumbnail for 25-Ke-SeeDB

Summary of 25-Ke-SeeDB

SSBD:database
25-Ke-SeeDB
SSBD:database URL
https://ssbd.riken.jp/database/25-Ke-SeeDB/
SSBD:repository
ssbd-repos-000025
SSBD:repository URL
https://ssbd.riken.jp/repository/25/
Title
-
Description
-
Release date
2017-10-03
Updated date
2017-11-15
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
52 ( Image datasets: 52, Quantitative data datasets: 0 )
Size of Datasets
17.1 GB ( Image datasets: 17.1 GB, Quantitative data datasets: 0 bytes )
Organism(s)
Mus musculus
Gene symbol(s)
Thy1
Protein name(s)
OMP
Protein tag(s)
GFP, YFP
Datatype
neuron structure
Molecular Function (MF)
Biological Process (BP)
-
Cellular Component (CC)
-
Biological Imaging Method
-
XYZ Scale
XY: 1.988 micrometer/pixel, Z: 5.0 micrometer/slice, XY: 0.994 micrometer/pixel, Z: 5.0 micrometer/slice, XY: 1.242 micrometer/pixel, Z: 4.0 micrometer/slice, XY: 1.59 micrometer/pixel, Z: 10.0 micrometer/slice, XY: 1.242 micrometer/pixel, Z: 5.0 micrometer/slice, XY: 1.59 micrometer/pixel, Z: 200.0 micrometer/slice, XY: 1.382 micrometer/pixel, Z: 5.0 micrometer/slice, XY: 1.988 micrometer/pixel, Z: 13.0 micrometer/slice, XY: 1.59 micrometer/pixel, Z: 20.0 micrometer/slice, XY: 1.59 micrometer/pixel, Z: 500.0 micrometer/slice, XY: 1.446 micrometer/pixel, Z: 300.0 micrometer/slice, XY: 1.59 micrometer/pixel, Z: 25.0 micrometer/slice
T scale
-
Image Acquisition
Experiment type
Other
Microscope type
ConfocalMicroscope
Acquisition mode
LaserScanningConfocalMicroscopy
Contrast method
Fluorescence
Microscope model
Olympus FV1000 built on IX81 (confocal), Olympus FV1000MPE (two-photon)
Detector model
PMT, GaAsP
Objective model
Olympus XLPLN IMA-SP 25x/0.9, Olympus UPLSAPO10X2 10x/0.4, Olympus UMPLFLN 10x/0.3 W, Olympus XLPLN25XSVMP 25x/1.05 W, Olympus XLSLPLN25XSVMP 25x/0.9
Filter set
-
Related paper(s)
Contact
Takeshi Imai , RIKEN , Center for Developmental Biology , Laboratory for Sensory Circuit Formation
Contributors
Meng-Tsen Ke, Satoshi Fujimoto, Takeshi Imai

Dataset List of 25-Ke-SeeDB

Thumbnail
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
Download Images
Thumbnail Thumbnail for dataset Fig3A_Thy1-YFP-H
# 833
Datast ID Fig3A_Thy1-YFP-H
Dataset Kind Image data
Dataset Size 215.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset Fig3B_Thy1-YFP-H
# 834
Datast ID Fig3B_Thy1-YFP-H
Dataset Kind Image data
Dataset Size 284.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset Fig3C_Thy1-YFP-H_dv-2
# 835
Datast ID Fig3C_Thy1-YFP-H_dv-2
Dataset Kind Image data
Dataset Size 566.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset Fig3C_Thy1-YFP-H_dv-3
# 836
Datast ID Fig3C_Thy1-YFP-H_dv-3
Dataset Kind Image data
Dataset Size 585.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset Fig3D_Thy1-YFP-H
# 837
Datast ID Fig3D_Thy1-YFP-H
Dataset Kind Image data
Dataset Size 1.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset Fig3E_Thy1-YFP-H
# 838
Datast ID Fig3E_Thy1-YFP-H
Dataset Kind Image data
Dataset Size 48.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset Fig4_Thy1-YFP-H
# 839
Datast ID Fig4_Thy1-YFP-H
Dataset Kind Image data
Dataset Size 358.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset Fig5C_Thy1-YFP-H_injE
# 840
Datast ID Fig5C_Thy1-YFP-H_injE
Dataset Kind Image data
Dataset Size 214.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset Fig5C_Thy1-YFP-H_injG
# 841
Datast ID Fig5C_Thy1-YFP-H_injG
Dataset Kind Image data
Dataset Size 198.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset Fig5C_mitral_cell_1
# 842
Datast ID Fig5C_mitral_cell_1
Dataset Kind Image data
Dataset Size 198.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset Fig5C_mitral_cell_2
# 843
Datast ID Fig5C_mitral_cell_2
Dataset Kind Image data
Dataset Size 121.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset Fig5C_mitral_cell_3
# 844
Datast ID Fig5C_mitral_cell_3
Dataset Kind Image data
Dataset Size 214.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset Fig5C_mitral_cell_4
# 845
Datast ID Fig5C_mitral_cell_4
Dataset Kind Image data
Dataset Size 137.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset Fig5C_mitral_cell_5
# 846
Datast ID Fig5C_mitral_cell_5
Dataset Kind Image data
Dataset Size 532.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset Fig6A_OMP-GFP
# 847
Datast ID Fig6A_OMP-GFP
Dataset Kind Image data
Dataset Size 515.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS9_dorsal_face
# 848
Datast ID FigS9_dorsal_face
Dataset Kind Image data
Dataset Size 380.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS10A_P72
# 849
Datast ID FigS10A_P72
Dataset Kind Image data
Dataset Size 752.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS10B_P72
# 850
Datast ID FigS10B_P72
Dataset Kind Image data
Dataset Size 2.4 GB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_L_C
# 851
Datast ID FigS11A_L_C
Dataset Kind Image data
Dataset Size 118.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_L_L01
# 852
Datast ID FigS11A_L_L01
Dataset Kind Image data
Dataset Size 118.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_L_L02
# 853
Datast ID FigS11A_L_L02
Dataset Kind Image data
Dataset Size 118.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_L_L03
# 854
Datast ID FigS11A_L_L03
Dataset Kind Image data
Dataset Size 118.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_L_L04
# 855
Datast ID FigS11A_L_L04
Dataset Kind Image data
Dataset Size 118.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_L_L05
# 856
Datast ID FigS11A_L_L05
Dataset Kind Image data
Dataset Size 118.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_L_L06
# 857
Datast ID FigS11A_L_L06
Dataset Kind Image data
Dataset Size 118.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_L_L07
# 858
Datast ID FigS11A_L_L07
Dataset Kind Image data
Dataset Size 118.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_L_L08
# 859
Datast ID FigS11A_L_L08
Dataset Kind Image data
Dataset Size 118.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_L_L09
# 860
Datast ID FigS11A_L_L09
Dataset Kind Image data
Dataset Size 118.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_L_L10
# 861
Datast ID FigS11A_L_L10
Dataset Kind Image data
Dataset Size 118.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_L_L11
# 862
Datast ID FigS11A_L_L11
Dataset Kind Image data
Dataset Size 118.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_L_L12
# 863
Datast ID FigS11A_L_L12
Dataset Kind Image data
Dataset Size 118.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_L_L13
# 864
Datast ID FigS11A_L_L13
Dataset Kind Image data
Dataset Size 118.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_L_L00
# 865
Datast ID FigS11A_L_L00
Dataset Kind Image data
Dataset Size 118.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_R_C
# 866
Datast ID FigS11A_R_C
Dataset Kind Image data
Dataset Size 127.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_R_R01
# 867
Datast ID FigS11A_R_R01
Dataset Kind Image data
Dataset Size 127.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_R_R02
# 868
Datast ID FigS11A_R_R02
Dataset Kind Image data
Dataset Size 127.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_R_R03
# 869
Datast ID FigS11A_R_R03
Dataset Kind Image data
Dataset Size 127.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_R_R04
# 870
Datast ID FigS11A_R_R04
Dataset Kind Image data
Dataset Size 127.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_R_R05
# 871
Datast ID FigS11A_R_R05
Dataset Kind Image data
Dataset Size 127.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_R_R06
# 872
Datast ID FigS11A_R_R06
Dataset Kind Image data
Dataset Size 127.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_R_R07
# 873
Datast ID FigS11A_R_R07
Dataset Kind Image data
Dataset Size 127.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_R_R08
# 874
Datast ID FigS11A_R_R08
Dataset Kind Image data
Dataset Size 127.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_R_R09
# 875
Datast ID FigS11A_R_R09
Dataset Kind Image data
Dataset Size 127.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_R_R10
# 876
Datast ID FigS11A_R_R10
Dataset Kind Image data
Dataset Size 127.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_R_R11
# 877
Datast ID FigS11A_R_R11
Dataset Kind Image data
Dataset Size 127.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_R_R12
# 878
Datast ID FigS11A_R_R12
Dataset Kind Image data
Dataset Size 127.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_R_R13
# 879
Datast ID FigS11A_R_R13
Dataset Kind Image data
Dataset Size 127.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11A_R_R14
# 880
Datast ID FigS11A_R_R14
Dataset Kind Image data
Dataset Size 127.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11B_P21
# 881
Datast ID FigS11B_P21
Dataset Kind Image data
Dataset Size 1.9 GB
4D view
SSBD:OMERO
Download BDML
Download Image data
Thumbnail Thumbnail for dataset FigS11C_P21
# 882
Datast ID FigS11C_P21
Dataset Kind Image data
Dataset Size 616.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data