Summary of 233-Nishiyama-CellDyn


SSBD:database
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Title
Live imaging of HEK293 cells expressing P2Y6 receptors or P2Y6R mutants.
Description
-
Release date
2022-11-23
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
41 ( Image datasets: 41, Quantitative data datasets: 0 )
Size of Datasets
90.9 MB ( Image datasets: 90.9 MB, Quantitative data datasets: 0 bytes )

Organism(s)
Homo sapiens
Cell lines(s)
HEK293
Protein name(s)
A2BAR, AT1R, P2Y6R
Protein tag(s)
EGFP, YFP

Datatype
-
Molecular Function (MF)
G protein-coupled receptor kinase activity
Biological Process (BP)
regulation of G protein-coupled receptor internalization
Cellular Component (CC)
Biological Imaging Method
confocal microscopy, fluorescence microscopy
X scale
NA, 84.6582 micrometer/pixel
Y scale
NA, 84.6582 micrometer/pixel
Z scale
-
T scale
10 second per time interval, NA

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Kazuhiro Nishiyama, Akiyuki Nishimura, Kakeru Shimoda, Tomohiro Tanaka, Yuri Kato, Takahiro Shibata, Hiroshi Tanaka, Hitoshi Kurose, Yasu-Taka Azuma, Hideshi Ihara, Yoshito Kumagai, Takaaki Akaike, Philip Eaton, Koji Uchida, Motohiro Nishida (2022) Redox-dependent internalization of the purinergic P2Y6 receptor limits colitis progression., Science signaling, Volume 15, Number 716, pp. eabj0644

Published in 2022 Jan 11 (Electronic publication in Jan. 11, 2022, midnight )

(Abstract) After ligand stimulation, many G protein-coupled receptors (GPCRs) undergo beta-arrestin-dependent desensitization, during which they are internalized and either degraded or recycled to the plasma membrane. Some GPCRs are not subject to this type of desensitization because they lack the residues required to interact with beta-arrestins. We identified a mechanism of redox-dependent alternative internalization (REDAI) that promotes the internalization and degradation of the purinergic P2Y6 receptor (P2Y6R). Synthetic and natural compounds containing electrophilic isothiocyanate groups covalently modified P2Y6R at Cys(220), which promoted the ubiquitylation of Lys(137) and receptor internalization and degradation in various mouse and human cultured cell lines. Endogenous electrophiles also promoted ligand-dependent P2Y6R internalization and degradation. P2Y6R is highly abundant in inflammatory cells and promotes the pathogenesis of colitis. Deficiency in P2Y6R protected mice against experimentally induced colitis, and mice expressing a form of P2Y6R in which Cys(220) was mutated to nonmodifiable serine were more sensitive to the induction of colitis. Several other GPCRs, including A2BAR, contain cysteine and lysine residues at the appropriate positions to mediate REDAI, and isothiocyanate stimulated the internalization of A2BAR and of a form of P2Y2R with insertions of the appropriate residues. Thus, endogenous and exogenous electrophiles may limit colitis progression through cysteine modification of P2Y6R and may also mediate internalization of other GPCRs.
(MeSH Terms)

Contact
Motohiro Nishida , Kyushu University , Graduate School of Pharmaceutical Sciences
Contributors

Dataset List of 233-Nishiyama-CellDyn

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#
Dataset ID
Kind
Size
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Thumbnail Thumbnail for dataset Fig1C_WT_SFN_0min
# 8730
Datast ID Fig1C_WT_SFN_0min
Dataset Kind Image data
Dataset Size 241.3 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1C_WT_SFN_60min
# 8731
Datast ID Fig1C_WT_SFN_60min
Dataset Kind Image data
Dataset Size 184.0 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1C_WT_SFN_180min
# 8732
Dataset Kind Image data
Dataset Size 161.9 KB
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Thumbnail Thumbnail for dataset Fig2B_C220S_SFN_0h
# 8733
Datast ID Fig2B_C220S_SFN_0h
Dataset Kind Image data
Dataset Size 29.4 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2B_C220S_SFN_60min
# 8734
Dataset Kind Image data
Dataset Size 25.3 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2B_C220S_SFN_180min
# 8735
Dataset Kind Image data
Dataset Size 26.6 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3A_WT_GSNO_0min
# 8736
Datast ID Fig3A_WT_GSNO_0min
Dataset Kind Image data
Dataset Size 209.8 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3A_WT_GSNO_60min
# 8737
Dataset Kind Image data
Dataset Size 158.5 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3A_WT_GSNO_120min
# 8738
Dataset Kind Image data
Dataset Size 166.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3E_WT_UDP_0min
# 8739
Datast ID Fig3E_WT_UDP_0min
Dataset Kind Image data
Dataset Size 242.4 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3E_WT_UDP_30min
# 8740
Datast ID Fig3E_WT_UDP_30min
Dataset Kind Image data
Dataset Size 209.6 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3E_WT_UDP_60min
# 8741
Datast ID Fig3E_WT_UDP_60min
Dataset Kind Image data
Dataset Size 195.3 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3F_C220S_UDP_0min
# 8742
Dataset Kind Image data
Dataset Size 221.9 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3F_C220S_UDP_30min
# 8743
Dataset Kind Image data
Dataset Size 199.2 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3F_C220S_UDP_60min
# 8744
Dataset Kind Image data
Dataset Size 187.6 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6D_AT1R_ANG_0min
# 8745
Dataset Kind Image data
Dataset Size 41.4 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6D_AT1R_ANG_5min
# 8746
Dataset Kind Image data
Dataset Size 39.5 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6D_AT1R_ANG_15min
# 8747
Dataset Kind Image data
Dataset Size 37.3 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6D_AT1R_SFN_0min
# 8748
Dataset Kind Image data
Dataset Size 434.0 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6D_AT1R_SFN_60min
# 8749
Dataset Kind Image data
Dataset Size 423.3 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6D_AT1R_SFN_180min
# 8750
Dataset Kind Image data
Dataset Size 389.5 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6F_A2BR_SFN_0min
# 8751
Dataset Kind Image data
Dataset Size 83.1 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6F_A2BR_SFN_60min
# 8752
Dataset Kind Image data
Dataset Size 82.0 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig6F_A2BR_SFN_180min
# 8753
Dataset Kind Image data
Dataset Size 72.0 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS3B_P2Y6R_arrestin_control
# 8754
Dataset Kind Image data
Dataset Size 396.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS3B_P2Y6R_arrestin_SFN_30min
# 8755
Dataset Kind Image data
Dataset Size 352.9 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS3B_P2Y6R_arrestine_SFN_180min
# 8756
Dataset Kind Image data
Dataset Size 563.7 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS5_20160609_293_P2Y6R_C18S
# 8757
Dataset Kind Image data
Dataset Size 4.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS5_20160609_293_P2Y6R_C46S
# 8758
Dataset Kind Image data
Dataset Size 4.2 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS5_20160609_293_P2Y6R_C52S
# 8759
Dataset Kind Image data
Dataset Size 4.2 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS5_20160609_293_P2Y6R_C77S
# 8760
Dataset Kind Image data
Dataset Size 4.2 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS5_20160609_293_P2Y6R_C99S
# 8761
Dataset Kind Image data
Dataset Size 4.2 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS5_20160609_293_P2Y6R_C119S
# 8762
Dataset Kind Image data
Dataset Size 4.2 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS5_20160609_293_P2Y6R_C129S
# 8763
Dataset Kind Image data
Dataset Size 4.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS5_20160609_293_P2Y6R_C148S
# 8764
Dataset Kind Image data
Dataset Size 4.2 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS5_20160609_293_P2Y6R_C159S
# 8765
Dataset Kind Image data
Dataset Size 4.2 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS5_20160609_293_P2Y6R_C177S
# 8766
Dataset Kind Image data
Dataset Size 4.2 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS5_20160609_293_P2Y6R_C211-213S
# 8767
Dataset Kind Image data
Dataset Size 4.2 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS5_20160609_293_P2Y6R_C220S
# 8768
Dataset Kind Image data
Dataset Size 4.2 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS5_20160609_293_P2Y6R_C273S
# 8769
Dataset Kind Image data
Dataset Size 31.0 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS5_20160609_293_P2Y6R_WT
# 8770
Dataset Kind Image data
Dataset Size 4.2 MB
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SSBD:OMERO
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