SSBD:database

Thumbnail for 183-Iwasaki-SpineDyn

Summary of 183-Iwasaki-SpineDyn

SSBD:database
183-Iwasaki-SpineDyn
SSBD:database URL
https://ssbd.riken.jp/database/183-Iwasaki-SpineDyn/
SSBD:repository
ssbd-repos-000183
SSBD:repository URL
https://ssbd.riken.jp/repository/183/
Title
Time-lapse images or SIM images of Actin organization and dynamics in mice during dendritic spine development.
Description
-
Release date
2022-03-31
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
34 ( Image datasets: 34, Quantitative data datasets: 0 )
Size of Datasets
3.7 GB ( Image datasets: 3.7 GB, Quantitative data datasets: 0 bytes )
Organism(s)
Mus musculus
Protein name(s)
EVH1, EVH2, F-actin, GAB, VASP, actin
Protein tag(s)
EGFP, mRFP, tagRFP
Datatype
-
Molecular Function (MF)
-
Biological Process (BP)
synapse organization, dendritic spine development
Cellular Component (CC)
dendritic spine
Biological Imaging Method
structured illumination microscopy, time lapse microscopy
X scale
0.103 micrometer/pixel, 0.16 micrometer/pixel, 0.032 micrometer/pixel
Y scale
0.103 micrometer/pixel, 0.16 micrometer/pixel, 0.032 micrometer/pixel
Z scale
NA (single image), 0.12 micrometer/slice, 0.5 micrometer/slice
T scale
5 minutes per time interval, 1 second per time interval, 60.99 seconds per time interval, NA (single image), 61.23 seconds per time interval, 103.92 seconds per time interval, 60.10 seconds per time interval, 81.7 seconds per time interval
Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Related paper(s)
Contact
Shigeo Okabe , The University of Tokyo , Department of Cellular Neurobiology, Graduate School of Medicine
Contributors

Dataset List of 183-Iwasaki-SpineDyn

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#
Dataset ID
Kind
Size
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1A_Spine_VASP_Factin_dynamics_1
# 7326
Datast ID Fig1A_Spine_VASP_Factin_dynamics_1
Dataset Kind Image data
Dataset Size 217.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1A_Spine_VASP_Factin_dynamics_2
# 7327
Datast ID Fig1A_Spine_VASP_Factin_dynamics_2
Dataset Kind Image data
Dataset Size 217.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2A_distribution_Lifeact-EGFP_tagRFP-VASP
# 7328
Datast ID Fig2A_distribution_Lifeact-EGFP_tagRFP-VASP
Dataset Kind Image data
Dataset Size 52.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3D_Lifeact-EGFP_tagRFP-dEVH1_distribution
# 7329
Datast ID Fig3D_Lifeact-EGFP_tagRFP-dEVH1_distribution
Dataset Kind Image data
Dataset Size 70.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3F_Lifeact-EGFP_tagRFP-dEVH2_distribution
# 7330
Datast ID Fig3F_Lifeact-EGFP_tagRFP-dEVH2_distribution
Dataset Kind Image data
Dataset Size 70.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig4B_distribution_Lifeact-EGFP_tagRFP-GAB_mutantVASP
# 7331
Datast ID Fig4B_distribution_Lifeact-EGFP_tagRFP-GAB_mutantVASP
Dataset Kind Image data
Dataset Size 70.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig4D_distribution_Lifeact-EGFP_tagRFP-GAB_mutantCOCO
# 7332
Datast ID Fig4D_distribution_Lifeact-EGFP_tagRFP-GAB_mutantCOCO
Dataset Kind Image data
Dataset Size 52.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5A_EGFP-VASP_control
# 7333
Datast ID Fig5A_EGFP-VASP_control
Dataset Kind Image data
Dataset Size 43.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5A_EGFP-VASP_tagRFP-dEVH1
# 7334
Datast ID Fig5A_EGFP-VASP_tagRFP-dEVH1
Dataset Kind Image data
Dataset Size 37.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5C_EGFP-actin_control
# 7335
Datast ID Fig5C_EGFP-actin_control
Dataset Kind Image data
Dataset Size 37.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5C_EGFP-actin_tagRFP-dEVH1
# 7336
Datast ID Fig5C_EGFP-actin_tagRFP-dEVH1
Dataset Kind Image data
Dataset Size 55.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5G_dendrites_SIM_EGFP_control
# 7337
Datast ID Fig5G_dendrites_SIM_EGFP_control
Dataset Kind Image data
Dataset Size 126.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5H_dendrites_SIM_EGFP_tagRFP-dEVH1
# 7338
Datast ID Fig5H_dendrites_SIM_EGFP_tagRFP-dEVH1
Dataset Kind Image data
Dataset Size 126.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5i_spines_SIM_EGFP_control1
# 7339
Datast ID Fig5i_spines_SIM_EGFP_control1
Dataset Kind Image data
Dataset Size 126.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5i_spines_SIM_EGFP_control2
# 7340
Datast ID Fig5i_spines_SIM_EGFP_control2
Dataset Kind Image data
Dataset Size 126.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5i_spines_SIM_EGFP_control3
# 7341
Datast ID Fig5i_spines_SIM_EGFP_control3
Dataset Kind Image data
Dataset Size 126.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5i_spines_SIM_EGFP_control4
# 7342
Datast ID Fig5i_spines_SIM_EGFP_control4
Dataset Kind Image data
Dataset Size 126.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5i_spines_SIM_EGFP_control5
# 7343
Datast ID Fig5i_spines_SIM_EGFP_control5
Dataset Kind Image data
Dataset Size 126.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5i_spines_SIM_EGFP_control7
# 7344
Datast ID Fig5i_spines_SIM_EGFP_control7
Dataset Kind Image data
Dataset Size 126.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5i_spines_SIM_EGFP_control6
# 7345
Datast ID Fig5i_spines_SIM_EGFP_control6
Dataset Kind Image data
Dataset Size 126.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5i_spines_SIM_EGFP_control8
# 7346
Datast ID Fig5i_spines_SIM_EGFP_control8
Dataset Kind Image data
Dataset Size 126.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5i_spines_SIM_EGFP_control9
# 7347
Datast ID Fig5i_spines_SIM_EGFP_control9
Dataset Kind Image data
Dataset Size 126.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5i_spines_SIM_EGFP_control10
# 7348
Datast ID Fig5i_spines_SIM_EGFP_control10
Dataset Kind Image data
Dataset Size 126.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5j_spines_SIM_EGFP_tagRFP-dEVH1_1
# 7349
Datast ID Fig5j_spines_SIM_EGFP_tagRFP-dEVH1_1
Dataset Kind Image data
Dataset Size 126.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5j_spines_SIM_EGFP_tagRFP-dEVH1_2
# 7350
Datast ID Fig5j_spines_SIM_EGFP_tagRFP-dEVH1_2
Dataset Kind Image data
Dataset Size 126.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5j_spines_SIM_EGFP_tagRFP-dEVH1_3
# 7351
Datast ID Fig5j_spines_SIM_EGFP_tagRFP-dEVH1_3
Dataset Kind Image data
Dataset Size 126.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5j_spines_SIM_EGFP_tagRFP-dEVH1_4
# 7352
Datast ID Fig5j_spines_SIM_EGFP_tagRFP-dEVH1_4
Dataset Kind Image data
Dataset Size 126.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5j_spines_SIM_EGFP_tagRFP-dEVH1_5
# 7353
Datast ID Fig5j_spines_SIM_EGFP_tagRFP-dEVH1_5
Dataset Kind Image data
Dataset Size 126.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5j_spines_SIM_EGFP_tagRFP-dEVH1_6
# 7354
Datast ID Fig5j_spines_SIM_EGFP_tagRFP-dEVH1_6
Dataset Kind Image data
Dataset Size 126.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5j_spines_SIM_EGFP_tagRFP-dEVH1_7
# 7355
Datast ID Fig5j_spines_SIM_EGFP_tagRFP-dEVH1_7
Dataset Kind Image data
Dataset Size 126.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5j_spines_SIM_EGFP_tagRFP-dEVH1_8
# 7356
Datast ID Fig5j_spines_SIM_EGFP_tagRFP-dEVH1_8
Dataset Kind Image data
Dataset Size 126.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5j_spines_SIM_EGFP_tagRFP-dEVH1_9
# 7357
Datast ID Fig5j_spines_SIM_EGFP_tagRFP-dEVH1_9
Dataset Kind Image data
Dataset Size 126.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5j_spines_SIM_EGFP_tagRFP-dEVH1_10
# 7358
Datast ID Fig5j_spines_SIM_EGFP_tagRFP-dEVH1_10
Dataset Kind Image data
Dataset Size 126.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig5j_spines_SIM_EGFP_tagRFP-dEVH1_11
# 7359
Datast ID Fig5j_spines_SIM_EGFP_tagRFP-dEVH1_11
Dataset Kind Image data
Dataset Size 126.2 MB
4D view
SSBD:OMERO
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