Summary of 179-Kobachi-BLVRAactivity

SSBD:database
SSBD:database URL
Title
Fluorescence images of biliverdin reductase-A (BLVRA) activity in WT or BLVRA KO mice or HeLa cells.
Description
-
Relase date
2022-03-31
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
89 ( Image datasets: 89, Quantitative data datasets: 0 )
Size of Datasets
2.0 GB ( Image datasets: 2.0 GB, Quantitative data datasets: 0 bytes )

Organism(s)
Homo sapiens, Mus musculus
Strain(s)
MEFs
Cell lines(s)
HeLa cell
Gene symbol(s)
Bivra, NuCyM
Protein tag(s)
mCherry
Reporter(s)
NIR-GECO1

Datatype
-
Molecular Function (MF)
biliverdin reductase
Biological Process (BP)
-
Cellular Component (CC)
NA, cytoplasm
Biological Imaging Method
confocal microscopy, fluorescence microscopy
X scale
0.994 micrometer/pixel, 0.621 micrometer/pixel, 0.248 micrometer/pixel, 1.242 micrometer/pixel
Y scale
0.994 micrometer/pixel, 0.621 micrometer/pixel, 0.248 micrometer/pixel, 1.242 micrometer/pixel
Z scale
2 micrometer/slice, 3 micrometer/slice, 1 micrometer/slice
T scale
23 sec per time interval, 26 sec per time interval, 27 sec per time interval, 30 sec per time interval, 144 sec per time interval, 120 sec per time interval, 28 sec per time interval, 31 sec per time interval, 22 sec per time interval, 145 sec per time interval, 143 sec per time interval, 1 sec per time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Kenju Kobachi, Sota Kuno, Shinya Sato, Kenta Sumiyama, Michiyuki Matsuda, Kenta Terai (2020) Biliverdin Reductase-A Deficiency Brighten and Sensitize Biliverdin-binding Chromoproteins., Cell structure and function, Volume 45, Number 2, pp. 131-141

Published in 2020 Aug 21 (Electronic publication in June 25, 2020, midnight )

(Abstract) Tissue absorbance, light scattering, and autofluorescence are significantly lower in the near-infrared (NIR) range than in the visible range. Because of these advantages, NIR fluorescent proteins (FPs) are in high demand for in vivo imaging. Nevertheless, application of NIR FPs such as iRFP is still limited due to their dimness in mammalian cells. In contrast to GFP and its variants, iRFP requires biliverdin (BV) as a chromophore. The dimness of iRFP is at least partly due to rapid reduction of BV by biliverdin reductase-A (BLVRA). Here, we established biliverdin reductase-a knockout (Blvra(-/-)) mice to increase the intracellular BV concentration and, thereby, to enhance iRFP fluorescence intensity. As anticipated, iRFP fluorescence intensity was significantly increased in all examined tissues of Blvra(-/-) mice. Similarly, the genetically encoded calcium indicator NIR-GECO1, which is engineered based on another NIR FP, mIFP, exhibited a marked increase in fluorescence intensity in mouse embryonic fibroblasts derived from Blvra(-/-) mice. We expanded this approach to an NIR light-sensing optogenetic tool, the BphP1-PpsR2 system, which also requires BV as a chromophore. Again, deletion of the Blvra gene markedly enhanced the light response in HeLa cells. These results indicate that the Blvra(-/-) mouse is a versatile tool for the in vivo application of NIR FPs and NIR light-sensing optogenetic tools.Key words: in vivo imaging, near-infrared fluorescent protein, biliverdin, biliverdin reductase, optogenetic tool.
(MeSH Terms)

Contact
Kenta Terai , Graduate School of Medicine, Kyoto University , Department of Pathology and Biology of Diseases
Contributors


Dataset List of 179-Kobachi-BLVRAactivity

#
Dataset ID
Kind
Size
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# 7122
Dataset Kind Image data
Dataset Size 13.9 MB
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# 7123
Dataset Kind Image data
Dataset Size 13.9 MB
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# 7124
Dataset Kind Image data
Dataset Size 27.3 MB
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# 7125
Dataset Kind Image data
Dataset Size 27.3 MB
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# 7126
Dataset Kind Image data
Dataset Size 27.3 MB
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# 7127
Dataset Kind Image data
Dataset Size 27.3 MB
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# 7128
Dataset Kind Image data
Dataset Size 27.3 MB
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# 7129
Dataset Kind Image data
Dataset Size 27.3 MB
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# 7130
Dataset Kind Image data
Dataset Size 13.9 MB
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SSBD:OMERO
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# 7131
Dataset Kind Image data
Dataset Size 13.9 MB
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SSBD:OMERO
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# 7132
Dataset Kind Image data
Dataset Size 27.3 MB
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SSBD:OMERO
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# 7133
Dataset Kind Image data
Dataset Size 27.3 MB
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# 7134
Dataset Kind Image data
Dataset Size 27.3 MB
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SSBD:OMERO
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# 7135
Dataset Kind Image data
Dataset Size 27.3 MB
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# 7136
Dataset Kind Image data
Dataset Size 27.3 MB
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# 7137
Dataset Kind Image data
Dataset Size 27.3 MB
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SSBD:OMERO
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# 7138
Dataset Kind Image data
Dataset Size 13.9 MB
4D view
SSBD:OMERO
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# 7139
Dataset Kind Image data
Dataset Size 13.9 MB
4D view
SSBD:OMERO
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# 7140
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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# 7141
Dataset Kind Image data
Dataset Size 27.3 MB
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SSBD:OMERO
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# 7142
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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# 7143
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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# 7144
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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# 7145
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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# 7146
Dataset Kind Image data
Dataset Size 13.9 MB
4D view
SSBD:OMERO
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# 7147
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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# 7148
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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# 7149
Dataset Kind Image data
Dataset Size 27.3 MB
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SSBD:OMERO
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# 7150
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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# 7151
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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# 7152
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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# 7153
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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# 7154
Dataset Kind Image data
Dataset Size 13.9 MB
4D view
SSBD:OMERO
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# 7155
Dataset Kind Image data
Dataset Size 13.9 MB
4D view
SSBD:OMERO
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# 7156
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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# 7157
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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# 7158
Dataset Kind Image data
Dataset Size 21.2 MB
4D view
SSBD:OMERO
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# 7159
Dataset Kind Image data
Dataset Size 19.1 MB
4D view
SSBD:OMERO
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# 7160
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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# 7161
Dataset Kind Image data
Dataset Size 27.3 MB
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SSBD:OMERO
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# 7162
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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# 7163
Dataset Kind Image data
Dataset Size 13.9 MB
4D view
SSBD:OMERO
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# 7164
Dataset Kind Image data
Dataset Size 13.9 MB
4D view
SSBD:OMERO
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# 7165
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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# 7166
Dataset Kind Image data
Dataset Size 27.3 MB
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SSBD:OMERO
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# 7167
Dataset Kind Image data
Dataset Size 27.3 MB
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SSBD:OMERO
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# 7168
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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# 7169
Dataset Kind Image data
Dataset Size 27.3 MB
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SSBD:OMERO
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# 7170
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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# 7171
Dataset Kind Image data
Dataset Size 13.9 MB
4D view
SSBD:OMERO
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# 7172
Dataset Kind Image data
Dataset Size 13.9 MB
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SSBD:OMERO
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# 7173
Dataset Kind Image data
Dataset Size 24.2 MB
4D view
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# 7174
Dataset Kind Image data
Dataset Size 27.3 MB
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# 7175
Dataset Kind Image data
Dataset Size 27.3 MB
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# 7176
Dataset Kind Image data
Dataset Size 27.3 MB
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# 7177
Dataset Kind Image data
Dataset Size 27.3 MB
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# 7178
Dataset Kind Image data
Dataset Size 27.3 MB
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SSBD:OMERO
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# 7179
Dataset Kind Image data
Dataset Size 13.9 MB
4D view
SSBD:OMERO
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# 7180
Dataset Kind Image data
Dataset Size 13.9 MB
4D view
SSBD:OMERO
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# 7181
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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# 7182
Dataset Kind Image data
Dataset Size 23.2 MB
4D view
SSBD:OMERO
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# 7183
Dataset Kind Image data
Dataset Size 27.3 MB
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SSBD:OMERO
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# 7184
Dataset Kind Image data
Dataset Size 27.3 MB
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SSBD:OMERO
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# 7185
Dataset Kind Image data
Dataset Size 27.3 MB
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SSBD:OMERO
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# 7186
Dataset Kind Image data
Dataset Size 27.3 MB
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SSBD:OMERO
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# 7187
Dataset Kind Image data
Dataset Size 27.3 MB
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SSBD:OMERO
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# 7188
Dataset Kind Image data
Dataset Size 27.3 MB
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SSBD:OMERO
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# 7189
Dataset Kind Image data
Dataset Size 27.3 MB
4D view
SSBD:OMERO
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# 7190
Datast ID Fig3D_Brain_BVRaKO
Dataset Kind Image data
Dataset Size 91.1 KB
4D view
SSBD:OMERO
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# 7191
Datast ID Fig3D_Brain_WT
Dataset Kind Image data
Dataset Size 91.0 KB
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# 7192
Dataset Kind Image data
Dataset Size 31.4 MB
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# 7193
Dataset Kind Image data
Dataset Size 31.4 MB
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# 7194
Dataset Kind Image data
Dataset Size 31.4 MB
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# 7195
Dataset Kind Image data
Dataset Size 31.4 MB
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# 7196
Dataset Kind Image data
Dataset Size 31.4 MB
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# 7197
Dataset Kind Image data
Dataset Size 24.2 MB
4D view
SSBD:OMERO
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# 7198
Datast ID Fig4C_N2_BVRAKO1
Dataset Kind Image data
Dataset Size 41.6 MB
4D view
SSBD:OMERO
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# 7199
Datast ID Fig4C_N2_BVRAKO2
Dataset Kind Image data
Dataset Size 41.6 MB
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SSBD:OMERO
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# 7200
Datast ID Fig4C_N2_BVRAKO3
Dataset Kind Image data
Dataset Size 41.6 MB
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SSBD:OMERO
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# 7201
Datast ID Fig4C_N2_WT1
Dataset Kind Image data
Dataset Size 41.6 MB
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# 7202
Datast ID Fig4C_N2_WT2
Dataset Kind Image data
Dataset Size 41.6 MB
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SSBD:OMERO
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# 7203
Datast ID Fig4C_N2_WT3
Dataset Kind Image data
Dataset Size 41.6 MB
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SSBD:OMERO
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# 7204
Datast ID Fig5C_HeLa_BVRAKO1
Dataset Kind Image data
Dataset Size 46.0 KB
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SSBD:OMERO
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# 7205
Datast ID Fig5C_HeLa_BVRAKO2
Dataset Kind Image data
Dataset Size 46.0 KB
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SSBD:OMERO
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# 7206
Datast ID Fig5C_HeLa_BVRAKO3
Dataset Kind Image data
Dataset Size 46.0 KB
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SSBD:OMERO
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# 7207
Datast ID Fig5C_HeLa_WT1
Dataset Kind Image data
Dataset Size 46.0 KB
4D view
SSBD:OMERO
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# 7208
Datast ID Fig5C_HeLa_WT2
Dataset Kind Image data
Dataset Size 46.0 KB
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SSBD:OMERO
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# 7209
Datast ID Fig5C_HeLa_WT3
Dataset Kind Image data
Dataset Size 46.0 KB
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SSBD:OMERO
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# 7210
Datast ID Fig5C_HeLa_WT4
Dataset Kind Image data
Dataset Size 46.0 KB
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SSBD:OMERO
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