Summary of 178-konagaya-CellMigration


SSBD:database
SSBD:database URL

SSBD:repository
SSBD:repository URL

Title
Images and BDML file for quantitative information of ERK activity in myogenic cell migration during mouse muscle regneration.
Description
-
Release date
2022-03-31
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
160 ( Image datasets: 160, Quantitative data datasets: 0 )
Size of Datasets
55.5 GB ( Image datasets: 55.5 GB, Quantitative data datasets: 0 bytes )

Organism(s)
Mus musculus
Protein name(s)
CDK1 inhibitor, CDK1_2 inhibitor, CDK4_6 inhibitor, MEK inhibitor
Reporter(s)
EKAREV, EKAREV-NLS, Fucci, mVenus-hGeminin, tdKeima

Datatype
-
Molecular Function (MF)
extracellular signal-regulated kinase activity
Biological Process (BP)
cell migration
Cellular Component (CC)
-
Biological Imaging Method
two-photon laser scanning microscopy, differential interference contrast microscopy, time lapse microscopy, fluorescence microscopy
X scale
0.397 micrometer/pixel, 1.325 micrometer/pixel, 1.59 micrometer/pixel, 0.621 micrometer/pixel, 0.795 micrometer/pixel, 1.2034 micrometer/pixel, 1.988 micrometer/pixel
Y scale
0.397 micrometer/pixel, 1.325 micrometer/pixel, 1.59 micrometer/pixel, 0.621 micrometer/pixel, 0.795 micrometer/pixel, 1.2034 micrometer/pixel, 1.988 micrometer/pixel
Z scale
1 micrometer/slice, 2 micrometer/slice, 24 micrometer/slice, 10 micrometer/slice, 5 micrometer/slice
T scale
267 sec for each time interval, 283 sec for each time interval, 314 sec for each time interval, 306 sec per time interval, 290 sec per time interval, 268.32 sec per time interval, 341 sec for each time interval, 300 sec per time interval, 259 sec for each time interval, 272 sec for each time interval, 274 sec per time interval, 285 sec for each time interval, 1 sec per time interval, NA, 238.06 sec per time interval, 305 sec per time interval, 287 sec for each time interval, 314.85 sec per time interval, 295 sec for each time interval, 300 sec for each time interval, 316 sec for each time interval, 266 sec per time interval, 278.2 sec per time interval, 308 sec per time interval, 284 sec per time interval, 270.06 sec per time interval, 311 sec per time interval, 306 sec for each time interval, 92 sec for each time interval, 320 sec for each time interval, 322 sec per time interval, 319 sec per time interval, 308 sec for each time interval, 264 sec per time interval, 328 sec per time interval, 258 sec for each time interval, 265 sec for each time interval, 382 sec for each time interval, 307 sec per time interval, 294 sec per time interval, 273 sec for each time interval, 319 sec for each time interval, 277 sec for each time interval, 278 sec per time interval, 234 sec per time interval, 1 sec for each time interval, 314 sec per time interval, 313 sec per time interval, 307 sec for each time interval, 282 sec for each time interval, 291 sec for each time interval, 240 sec per time interval, 297 sec for each time interval, 237 sec for each time interval, 312 sec per time interval, 260 sec for each time interval, 310 sec for each time interval, 292 sec for each time interval, 328.2 sec per time interval, 284 sec for each time interval, 303 sec for each time interval, 309 sec for each time interval, 263 sec for each time interval, 288 sec per time interval, 286 sec for each time interval, 301 sec for each time interval, 284.5 sec per time interval, 281 sec per time interval, 258 sec per time interval, 280 sec for each time interval, 267 sec per time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Yumi Konagaya, Kanako Takakura, Maina Sogabe, Anjali Bisaria, Chad Liu, Tobias Meyer, Atsuko Sehara-Fujisawa, Michiyuki Matsuda, Kenta Terai (2020) Intravital imaging reveals cell cycle-dependent myogenic cell migration during muscle regeneration., Cell cycle (Georgetown, Tex.), Volume 19, Number 22, pp. 3167-3181

Published in 2020 Nov (Electronic publication in Nov. 1, 2020, midnight )

(Abstract) During muscle regeneration, extracellular signal-regulated kinase (ERK) promotes both proliferation and migration. However, the relationship between proliferation and migration is poorly understood in this context. To elucidate this complex relationship on a physiological level, we established an intravital imaging system for measuring ERK activity, migration speed, and cell-cycle phases in mouse muscle satellite cell-derived myogenic cells. We found that in vivo, ERK is maximally activated in myogenic cells two days after injury, and this is then followed by increases in cell number and motility. With limited effects of ERK activity on migration on an acute timescale, we hypothesized that ERK increases migration speed in the later phase by promoting cell-cycle progression. Our cell-cycle analysis further revealed that in myogenic cells, ERK activity is critical for G1/S transition, and cells migrate more rapidly in S/G2 phase 3 days after injury. Finally, migration speed of myogenic cells was suppressed after CDK1/2-but not CDK1-inhibitor treatment, demonstrating a critical role of CDK2 in myogenic cell migration. Overall, our study demonstrates that in myogenic cells, the ERK-CDK2 axis promotes not only G1/S transition but also migration, thus providing a novel mechanism for efficient muscle regeneration.
(MeSH Terms)

Contact
Kenta Terai , Graduate School of Medicine, Kyoto University , Department of Pathology and Biology of Diseases , Department of Pathology and Biology of Diseases
Contributors
Yumi Konagaya

Dataset List of 178-konagaya-CellMigration

Thumbnail
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
Download Images
Thumbnail Thumbnail for dataset Fig1D_myogenicCell_0dpi
# 6962
Dataset Kind Image data
Dataset Size 148.0 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig1D_myogenicCell_1dpi
# 6963
Dataset Kind Image data
Dataset Size 118.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig1D_myogenicCell_2dpi
# 6964
Dataset Kind Image data
Dataset Size 322.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig1D_myogenicCell_3dpi
# 6965
Dataset Kind Image data
Dataset Size 255.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig1D_myogenicCell_5dpi
# 6966
Dataset Kind Image data
Dataset Size 317.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2A_myogenicCell_migration_lapse1
# 6967
Dataset Kind Image data
Dataset Size 459.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2A_myogenicCell_migration_lapse2
# 6968
Dataset Kind Image data
Dataset Size 345.0 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2A_myogenicCell_migration_lapse3
# 6969
Dataset Kind Image data
Dataset Size 268.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2BC_myogenicCell_migration_N1_0dpi_lapse2
# 6970
Dataset Kind Image data
Dataset Size 109.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2BC_myogenicCell_migration_N1_0dpi_lapse3
# 6971
Dataset Kind Image data
Dataset Size 130.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2BC_myogenicCell_migration_N1_0dpi_lapse4
# 6972
Dataset Kind Image data
Dataset Size 109.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2BC_myogenicCell_migration_N1_2dpi_lapse5
# 6973
Dataset Kind Image data
Dataset Size 379.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2BC_myogenicCell_migration_N1_2dpi_lapse6
# 6974
Dataset Kind Image data
Dataset Size 379.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2BC_myogenicCell_migration_N1_2dpi_lapse7
# 6975
Dataset Kind Image data
Dataset Size 379.9 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2BC_myogenicCell_migration_N1_3dpi_lapse2
# 6976
Dataset Kind Image data
Dataset Size 509.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2BC_myogenicCell_migration_N1_5dpi_lapse1
# 6977
Dataset Kind Image data
Dataset Size 409.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2BC_myogenicCell_migration_N1_5dpi_lapse2
# 6978
Dataset Kind Image data
Dataset Size 409.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2BC_myogenicCell_migration_N2_0dpi_lapse1
# 6979
Dataset Kind Image data
Dataset Size 340.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2BC_myogenicCell_migration_N2_0dpi_lapse2
# 6980
Dataset Kind Image data
Dataset Size 255.3 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2BC_myogenicCell_migration_N2_2dpi_lapse2
# 6981
Dataset Kind Image data
Dataset Size 848.3 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2BC_myogenicCell_migration_N2_3dpi_lapse1
# 6982
Dataset Kind Image data
Dataset Size 190.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2BC_myogenicCell_migration_N2_3dpi_lapse2
# 6983
Dataset Kind Image data
Dataset Size 253.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2BC_myogenicCell_migration_N2_3dpi_lapse3
# 6984
Dataset Kind Image data
Dataset Size 695.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2BC_myogenicCell_migration_N2_5dpi_lapse3
# 6985
Dataset Kind Image data
Dataset Size 443.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2BC_myogenicCell_migration_N3_0dpi_lapse4
# 6986
Dataset Kind Image data
Dataset Size 636.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2BC_myogenicCell_migration_N3_2dpi_lapse5
# 6987
Dataset Kind Image data
Dataset Size 340.0 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2BC_myogenicCell_migration_N3_2dpi_lapse6
# 6988
Dataset Kind Image data
Dataset Size 424.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2BC_myogenicCell_migration_N3_3dpi_lapse2
# 6989
Dataset Kind Image data
Dataset Size 345.0 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2BC_myogenicCell_migration_N3_3dpi_lapse3
# 6990
Dataset Kind Image data
Dataset Size 268.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2BC_myogenicCell_migration_N3_5dpi_lapse3
# 6991
Dataset Kind Image data
Dataset Size 443.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2DEF_myogenicCell_migration_N1_DMSO_lapse1
# 6992
Dataset Kind Image data
Dataset Size 190.5 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2DEF_myogenicCell_migration_N1_DMSO_lapse2
# 6993
Dataset Kind Image data
Dataset Size 253.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2DEF_myogenicCell_migration_N1_DMSO_lapse3
# 6994
Dataset Kind Image data
Dataset Size 695.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2DEF_myogenicCell_migration_N1_DMSO_lapse4
# 6995
Dataset Kind Image data
Dataset Size 758.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2DEF_myogenicCell_migration_N1_MEKi_lapse5
# 6996
Dataset Kind Image data
Dataset Size 758.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2DEF_myogenicCell_migration_N1_MEKi_lapse6
# 6997
Dataset Kind Image data
Dataset Size 758.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2DEF_myogenicCell_migration_N2_DMSO_lapse1
# 6998
Dataset Kind Image data
Dataset Size 459.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2DEF_myogenicCell_migration_N2_DMSO_lapse2
# 6999
Dataset Kind Image data
Dataset Size 345.0 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2DEF_myogenicCell_migration_N2_DMSO_lapse3
# 7000
Dataset Kind Image data
Dataset Size 268.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2DEF_myogenicCell_migration_N2_MEKi_lapse4
# 7001
Dataset Kind Image data
Dataset Size 154.0 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2DEF_myogenicCell_migration_N2_MEKi_lapse5
# 7002
Dataset Kind Image data
Dataset Size 421.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2DEF_myogenicCell_migration_N2_MEKi_lapse6
# 7003
Dataset Kind Image data
Dataset Size 497.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2DEF_myogenicCell_migration_N3_DMSO_lapse1
# 7004
Dataset Kind Image data
Dataset Size 115.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2DEF_myogenicCell_migration_N3_DMSO_lapse2
# 7005
Dataset Kind Image data
Dataset Size 115.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2DEF_myogenicCell_migration_N3_DMSO_lapse3
# 7006
Dataset Kind Image data
Dataset Size 154.0 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2DEF_myogenicCell_migration_N3_DMSO_lapse4
# 7007
Dataset Kind Image data
Dataset Size 115.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2DEF_myogenicCell_migration_N3_DMSO_lapse5
# 7008
Dataset Kind Image data
Dataset Size 230.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2DEF_myogenicCell_migration_N3_DMSO_lapse6
# 7009
Dataset Kind Image data
Dataset Size 459.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2DEF_myogenicCell_migration_N3_MEKi_lapse7
# 7010
Dataset Kind Image data
Dataset Size 230.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Fig2DEF_myogenicCell_migration_N3_MEKi_lapse8
# 7011
Dataset Kind Image data
Dataset Size 383.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data