Summary of 12-Takayama-Oocyte


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Title
-
Description
-
Release date
2016-10-03
Updated date
2020-02-03
License
CC BY-NC-SA
Kind
Image data, Quantitative data based on Experiment
Number of Datasets
238 ( Image datasets: 119, Quantitative data datasets: 119 )
Size of Datasets
8.4 GB ( Image datasets: 4.7 GB, Quantitative data datasets: 3.7 GB )

Organism(s)
Caenorhabditis elegans
Gene symbol(s)
fog-2, him-5, og-2, spe-11(hc77), spe-11(hc88), spe-42, spe-9(hc52), spe-9(hc88), trp-3, trp-3(sy693), trp-3(tn1233), yokSi3, yokSi5, yokSi6, yokSi7

Datatype
oocyte shape dynamics
Molecular Function (MF)
Biological Process (BP)
egg activation
Cellular Component (CC)
cytoplasm
Biological Imaging Method
-
XYZ Scale
XY: 0.435 micrometer/pixel, Z: 0 micrometer/slice, XY: 0.417 micrometer/pixel, Z: 0 micrometer/slice
T scale
5 second for each time interval, 1.6 second for each time interval, 1.014 second for each time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Jun Takayama, Shuichi Onami (2016) The Sperm TRP-3 Channel Mediates the Onset of a Ca(2+) Wave in the Fertilized C. elegans Oocyte., Cell reports, Volume 15, Number 3, pp. 625-637

Published in 2016 Apr 19 (Electronic publication in April 7, 2016, midnight )

(Abstract) Sperm induce Ca(2+) waves in the fertilized egg by introducing soluble factors or by surface interactions, which activate egg Ca(2+) channels. Involvement of sperm Ca(2+) channels is predicted by the conduit model; however, this model has not been validated. In Caenorhabditis elegans, the sperm-specific TRP family Ca(2+) channel TRP-3 mediates sperm-oocyte fusion. Here, using high-speed in vivo imaging and image analyses, we show that sperm induce an immediate local Ca(2+) rise followed by a Ca(2+) wave in fertilized C. elegans oocytes. Oocytes fertilized by rare trp-3 escaper sperm showed a lack of local rise and a delay in onset of the Ca(2+) wave. Sperm Ca(2+) imaging suggests that the local rise is not due to the bolus introduction of stored Ca(2+). These results suggest that, along with its primary function in sperm-oocyte fusion, TRP-3 induces Ca(2+) waves in fertilized oocytes, consistent with the conduit model.
(MeSH Terms)

Contact
Shuichi Onami , RIKEN , Quantitative Biology Center , Laboratory for Developmental Dynamics
Contributors
Jun Takayama, Shuichi Onami

Dataset List of 12-Takayama-Oocyte

Thumbnail
#
Dataset ID
Kind
Size
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# 536
Dataset Kind Quantitative data
Dataset Size 23.4 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1D_DMRE_110120-1
# 537
Dataset Kind Image data
Dataset Size 84.5 MB
4D view
SSBD:OMERO
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Thumbnail -
# 538
Dataset Kind Quantitative data
Dataset Size 20.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1D_DMRE_110120-2
# 539
Dataset Kind Image data
Dataset Size 83.8 MB
4D view
SSBD:OMERO
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Thumbnail -
# 540
Dataset Kind Quantitative data
Dataset Size 22.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1D_DMRE_110120-3
# 541
Dataset Kind Image data
Dataset Size 84.5 MB
4D view
SSBD:OMERO
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Thumbnail -
# 542
Dataset Kind Quantitative data
Dataset Size 21.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1D_DMRE_110124-1
# 543
Dataset Kind Image data
Dataset Size 84.5 MB
4D view
SSBD:OMERO
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Thumbnail -
# 544
Dataset Kind Quantitative data
Dataset Size 21.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1D_DMRE_110124-2
# 545
Dataset Kind Image data
Dataset Size 84.5 MB
4D view
SSBD:OMERO
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Thumbnail -
# 546
Dataset Kind Quantitative data
Dataset Size 22.8 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1D_DMRE_111115-1
# 547
Dataset Kind Image data
Dataset Size 84.5 MB
4D view
SSBD:OMERO
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Thumbnail -
# 548
Dataset Kind Quantitative data
Dataset Size 22.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1D_DMRE_111115-2
# 549
Dataset Kind Image data
Dataset Size 84.5 MB
4D view
SSBD:OMERO
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Thumbnail -
# 550
Dataset Kind Quantitative data
Dataset Size 21.4 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1E_DMRE_110215-1
# 551
Dataset Kind Image data
Dataset Size 84.5 MB
4D view
SSBD:OMERO
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Thumbnail -
# 552
Dataset Kind Quantitative data
Dataset Size 17.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1E_DMRE_110215-2
# 553
Dataset Kind Image data
Dataset Size 81.0 MB
4D view
SSBD:OMERO
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Thumbnail -
# 554
Dataset Kind Quantitative data
Dataset Size 20.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1E_DMRE_110215-3
# 555
Dataset Kind Image data
Dataset Size 81.0 MB
4D view
SSBD:OMERO
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Thumbnail -
# 556
Dataset Kind Quantitative data
Dataset Size 18.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1E_DMRE_110301-1
# 557
Dataset Kind Image data
Dataset Size 84.5 MB
4D view
SSBD:OMERO
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Thumbnail -
# 558
Dataset Kind Quantitative data
Dataset Size 19.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1E_DMRE_110301-3
# 559
Dataset Kind Image data
Dataset Size 84.5 MB
4D view
SSBD:OMERO
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Thumbnail -
# 560
Dataset Kind Quantitative data
Dataset Size 20.8 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1E_DMRE_110419-1
# 561
Dataset Kind Image data
Dataset Size 84.5 MB
4D view
SSBD:OMERO
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Thumbnail -
# 562
Dataset Kind Quantitative data
Dataset Size 25.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1E_DMRE_110419-2
# 563
Dataset Kind Image data
Dataset Size 84.5 MB
4D view
SSBD:OMERO
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Thumbnail -
# 564
Dataset Kind Quantitative data
Dataset Size 24.4 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1E_DMRE_110419-3
# 565
Dataset Kind Image data
Dataset Size 84.5 MB
4D view
SSBD:OMERO
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Thumbnail -
# 566
Dataset Kind Quantitative data
Dataset Size 20.8 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1E_DMRE_110419-4
# 567
Dataset Kind Image data
Dataset Size 84.5 MB
4D view
SSBD:OMERO
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Thumbnail -
# 568
Dataset Kind Quantitative data
Dataset Size 26.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1E_DMRE_110420-2
# 569
Dataset Kind Image data
Dataset Size 84.5 MB
4D view
SSBD:OMERO
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Thumbnail -
# 570
Datast ID Fig1F_TiE_120517-1
Dataset Kind Quantitative data
Dataset Size 58.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1F_TiE_120517-1
# 571
Datast ID Fig1F_TiE_120517-1
Dataset Kind Image data
Dataset Size 22.5 MB
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SSBD:OMERO
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Thumbnail -
# 572
Datast ID Fig1F_TiE_120517-2
Dataset Kind Quantitative data
Dataset Size 49.1 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1F_TiE_120517-2
# 573
Datast ID Fig1F_TiE_120517-2
Dataset Kind Image data
Dataset Size 17.7 MB
4D view
SSBD:OMERO
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Thumbnail -
# 574
Datast ID Fig1F_TiE_120619-1
Dataset Kind Quantitative data
Dataset Size 48.0 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1F_TiE_120619-1
# 575
Datast ID Fig1F_TiE_120619-1
Dataset Kind Image data
Dataset Size 19.4 MB
4D view
SSBD:OMERO
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Thumbnail -
# 576
Datast ID Fig1F_TiE_120619-2
Dataset Kind Quantitative data
Dataset Size 47.5 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1F_TiE_120619-2
# 577
Datast ID Fig1F_TiE_120619-2
Dataset Kind Image data
Dataset Size 22.5 MB
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SSBD:OMERO
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Thumbnail -
# 578
Datast ID Fig1F_TiE_120619-3
Dataset Kind Quantitative data
Dataset Size 54.4 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1F_TiE_120619-3
# 579
Datast ID Fig1F_TiE_120619-3
Dataset Kind Image data
Dataset Size 19.9 MB
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SSBD:OMERO
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Thumbnail -
# 580
Datast ID Fig1F_TiE_131017-1
Dataset Kind Quantitative data
Dataset Size 97.1 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1F_TiE_131017-1
# 581
Datast ID Fig1F_TiE_131017-1
Dataset Kind Image data
Dataset Size 20.0 MB
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SSBD:OMERO
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Thumbnail -
# 582
Datast ID Fig1F_TiE_131017-2
Dataset Kind Quantitative data
Dataset Size 42.5 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1F_TiE_131017-2
# 583
Datast ID Fig1F_TiE_131017-2
Dataset Kind Image data
Dataset Size 20.4 MB
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SSBD:OMERO
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Thumbnail -
# 584
Datast ID Fig1F_TiE_131017-5
Dataset Kind Quantitative data
Dataset Size 39.3 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1F_TiE_131017-5
# 585
Datast ID Fig1F_TiE_131017-5
Dataset Kind Image data
Dataset Size 18.4 MB
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SSBD:OMERO
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