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Summary of 114-Shiura-MouseEmbryoDyn

SSBD:Repository
114-Shiura-MouseEmbryoDyn
Title
RNA-FISH and immunofluorescence images of Xist/Tsix expression during peri-implantation embryoic development using whole-mount 3D RNA-FISH
Description
-
Relase date
2019-11-20
Updated date
-
License
CC-BY
Kind
Image data based on Experiment
Number of Datasets
179 ( Image datasets: 179, Quantitative data datasets: 0 )
Organism(s)
M. musculus
Datatype
X chromosome inactivation (XCI) dynamics
Molecular Function (MF)
Biological Process (BP)
gene expression, dosage compensation by inactivation of X chromosome
Cellular Component (CC)
necleus
Biological Imaging Method
-
Image Acquisition
ConfocalMicroscope , Immunofluorescence , LaserScanningConfocalMicroscopy , Fluorescence
XYZ Scale
XY: 0.2767553 micrometer/pixel, Z: 0.8 micrometer/slice, XY: 0.1757813 micrometer/pixel, Z: 0.7 micrometer/slice, XY: 0.1660532 micrometer/pixel, Z: NA, XY: 0.2372188 micrometer/pixel, Z: 0.8 micrometer/slice, XY: 0.2485922 micrometer/pixel, Z: 0.7 micrometer/slice, XY: 0.1660532 micrometer/pixel, Z: 0.8 micrometer/slice, XY: 0.2197266 micrometer/pixel, Z: 0.7 micrometer/slice, XY: 0.1845035 micrometer/pixel, Z: 0.8 micrometer/slice, XY: 0.2372188 micrometer/pixel, Z: NA, XY: 0.2075665 micrometer/pixel, Z: 0.8 micrometer/slice
T scale
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Related paper(s)

Hirosuke Shiura, Kuniya Abe (2019) Xist/Tsix expression dynamics during mouse peri-implantation development revealed by whole-mount 3D RNA-FISH., Scientific reports, Volume 9, Number 1, pp. 3637

Published in 2019 Mar 6 (Electronic publication in March 6, 2019, midnight )

(Abstract) During peri-implantation development in mice, X chromosome inactivation (XCI) status changes dynamically. Here, we examined the expression of Xist and its antisense partner, Tsix, via whole-mount 3D RNA-FISH using strand-specific probes and evaluated XCI status. The results indicate that Xist expression disappears completely by embryonic day (E) 4.5 without Tsix activation in the ICM and that Xist re-expression occurs at E4.75 in some cells, suggesting that random XCI is already initiated in these cells. Intriguingly, epiblast cells exhibiting biallelic Xist expression were observed frequently (~15%) at E5.25 and E5.5. Immunostaining analysis of epigenetic modifications suggests that global change in epigenomic status occurs concomitantly with the transition from imprinted to random XCI. However, global upregulation of H3K27me3 modifications initiated earlier than other modifications, occurring specifically in ICM during progression of Xist erasure. Although both Xist expression and imprinted XCI are thought to be stable in the primitive endoderm/visceral endoderm and trophectoderm/extraembryonic ectoderm lineages, transient loss of Xist clouds was noted only in a subset of extraembryonic ectodermal cells, suggesting distinct features of Xist regulation among the three different embryonic tissue layers. These results will serve as a basis for future functional studies of XCI regulation in vivo.
(MeSH Terms)
Contact
Kuniya Abe, Hirosuke Shiura , RIKEN , BioResource Research Center , Technology & Development Team for Mammalian Genome Dynamics,
Contributors
Hirosuke Shiura, Kuniya Abe

Dataset List of 114-Shiura-MouseEmbryoDyn

#
Dataset ID
Dataset Kind
4D View
SSBD:OMERO
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# 4497
Datast ID Fig1a-g_E3.5_1
Dataset Kind Image data
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SSBD:OMERO
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# 4498
Datast ID Fig1a-g_E3.5_2
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4499
Datast ID Fig1a-g_E3.5_3
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4500
Datast ID Fig1a-g_E3.75_1
Dataset Kind Image data
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SSBD:OMERO
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# 4501
Datast ID Fig1a-g_E3.75_2
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4502
Datast ID Fig1a-g_E3.75_3
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4503
Datast ID Fig1a-g_E3.75_4
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4504
Datast ID Fig1a-g_E4.0_1
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4505
Datast ID Fig1a-g_E4.0_2
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4506
Datast ID Fig1a-g_E4.0_3
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4507
Datast ID Fig1a-g_E4.25_1
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4508
Datast ID Fig1a-g_E4.25_2
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4509
Datast ID Fig1a-g_E4.25_3
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4510
Datast ID Fig1a-g_E4.25_4
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4511
Datast ID Fig1a-g_E4.25_5
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4512
Datast ID Fig1a-g_E4.25_6
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4513
Datast ID Fig1a-g_E4.50_1
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4514
Datast ID Fig1a-g_E4.50_2
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4515
Datast ID Fig1a-g_E4.50_3
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4516
Datast ID Fig1a-g_E4.75_1
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4517
Datast ID Fig1a-g_E4.75_2
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4518
Datast ID Fig1a-g_E4.75_3
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4519
Datast ID Fig1a-g_E4.75_4
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4520
Datast ID Fig1a-g_E4.75_5
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4521
Datast ID Fig1a-g_E4.75_6
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4522
Datast ID Fig1a-g_E5.0_1
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4523
Datast ID Fig1a-g_E5.0_2
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4524
Datast ID Fig1a-g_E5.0_3
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4525
Datast ID Fig1a-g_E5.0_4
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4526
Datast ID Fig1a-g_E5.25_1
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4527
Datast ID Fig1a-g_E5.25_2
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4528
Datast ID Fig1a-g_E5.25_3
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4529
Datast ID Fig1a-g_E5.50_1
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4530
Datast ID Fig1a-g_E5.50_2
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4531
Datast ID Fig1a-g_E5.50_3
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4532
Datast ID Fig1a-g_E5.50_4
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4533
Datast ID Fig1a-g_E6.5_1
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4534
Datast ID Fig1a-g_E6.5_2
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4535
Datast ID Fig1h_E4.75
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4536
Datast ID Fig1i_E5.5
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4537
Datast ID Fig1j_Lamp2_1
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4538
Datast ID Fig1j_Lamp2_2
Dataset Kind Image data
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SSBD:OMERO
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# 4539
Datast ID Fig1j_Lamp2_3
Dataset Kind Image data
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SSBD:OMERO
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# 4540
Datast ID Fig1j_Pgk1_1
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4541
Datast ID Fig1j_Pgk1_2
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4542
Datast ID Fig2a_E3.75_1
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4543
Datast ID Fig2a_E3.75_2
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4544
Datast ID Fig2a_E3.75_3
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4545
Datast ID Fig2a_E3.75_4
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4546
Datast ID Fig2a_E4.0_1
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4547
Datast ID Fig2a_E4.0_2
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4548
Datast ID Fig2a_E4.0_3
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4549
Datast ID Fig2a_E4.0_4
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4550
Datast ID Fig2a_E4.0_5
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4551
Datast ID Fig2a_E4.25_1
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4552
Datast ID Fig2a_E4.25_2
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4553
Datast ID Fig2a_E4.25_3
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4554
Datast ID Fig2a_E4.25_4
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4555
Datast ID Fig2a_E4.50_1
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4556
Datast ID Fig2a_E4.50_2
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4557
Datast ID Fig2a_E4.50_3
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4558
Datast ID Fig2a_E4.50_4
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4559
Datast ID Fig2a_E4.75_1
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4560
Datast ID Fig2a_E4.75_2
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4561
Datast ID Fig2a_E4.75_3
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4562
Datast ID Fig2a_E5.0_1
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4563
Datast ID Fig2a_E5.0_2
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4564
Datast ID Fig2a_E5.0_3
Dataset Kind Image data
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SSBD:OMERO
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# 4565
Datast ID Fig2a_E5.0_4
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4566
Datast ID Fig2a_E5.0_5
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4567
Datast ID Fig2a_E5.25_1
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4568
Datast ID Fig2a_E5.25_2
Dataset Kind Image data
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SSBD:OMERO
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# 4569
Datast ID Fig2a_E5.25_3
Dataset Kind Image data
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SSBD:OMERO
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# 4570
Datast ID Fig2a_E5.25_4
Dataset Kind Image data
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SSBD:OMERO
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# 4571
Datast ID Fig2a_E5.50_1
Dataset Kind Image data
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SSBD:OMERO
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# 4572
Datast ID Fig2a_E5.50_2
Dataset Kind Image data
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SSBD:OMERO
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# 4573
Datast ID Fig2a_E5.50_3
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4574
Datast ID Fig2a_E5.50_4
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4575
Datast ID Fig2b_E3.50_1
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4576
Datast ID Fig2b_E3.50_2
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4577
Datast ID Fig2b_E3.50_3
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4578
Datast ID Fig2b_E3.50_4
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4579
Datast ID Fig2b_E3.75_1
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4580
Datast ID Fig2b_E3.75_2
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4581
Datast ID Fig2b_E3.75_3
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4582
Datast ID Fig2b_E3.75_4
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4583
Datast ID Fig2b_E3.75_5
Dataset Kind Image data
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SSBD:OMERO
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# 4584
Datast ID Fig2b_E3.75_6
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4585
Datast ID Fig2b_E4.0_1
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4586
Datast ID Fig2b_E4.0_2
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4587
Datast ID Fig2b_E4.0_3
Dataset Kind Image data
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SSBD:OMERO
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# 4588
Datast ID Fig2b_E4.25_1
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4589
Datast ID Fig2b_E4.25_2
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4590
Datast ID Fig2b_E4.25_3
Dataset Kind Image data
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SSBD:OMERO
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# 4591
Datast ID Fig2b_E4.25_4
Dataset Kind Image data
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SSBD:OMERO
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# 4592
Datast ID Fig2b_E4.50_1
Dataset Kind Image data
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SSBD:OMERO
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# 4593
Datast ID Fig2b_E4.50_2
Dataset Kind Image data
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SSBD:OMERO
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# 4594
Datast ID Fig2b_E4.50_3
Dataset Kind Image data
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SSBD:OMERO
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# 4595
Datast ID Fig2b_E4.50_4
Dataset Kind Image data
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SSBD:OMERO
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# 4596
Datast ID Fig2b_E4.75_1
Dataset Kind Image data
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SSBD:OMERO
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# 4597
Datast ID Fig2b_E4.75_2
Dataset Kind Image data
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SSBD:OMERO
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# 4598
Datast ID Fig2b_E4.75_3
Dataset Kind Image data
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SSBD:OMERO
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# 4599
Datast ID Fig2b_E4.75_4
Dataset Kind Image data
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SSBD:OMERO
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# 4600
Datast ID Fig2b_E5.0_1
Dataset Kind Image data
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SSBD:OMERO
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# 4601
Datast ID Fig2b_E5.0_2
Dataset Kind Image data
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SSBD:OMERO
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# 4602
Datast ID Fig2b_E5.0_3
Dataset Kind Image data
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SSBD:OMERO
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# 4603
Datast ID Fig2b_E5.0_4
Dataset Kind Image data
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SSBD:OMERO
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# 4604
Datast ID Fig2b_E5.25_1
Dataset Kind Image data
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SSBD:OMERO
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# 4605
Datast ID Fig2b_E5.25_2
Dataset Kind Image data
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SSBD:OMERO
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# 4606
Datast ID Fig2b_E5.25_3
Dataset Kind Image data
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SSBD:OMERO
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# 4607
Datast ID Fig2b_E5.25_4
Dataset Kind Image data
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SSBD:OMERO
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# 4608
Datast ID Fig2b_E5.25_5
Dataset Kind Image data
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SSBD:OMERO
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# 4609
Datast ID Fig2b_E5.50_1
Dataset Kind Image data
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SSBD:OMERO
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# 4610
Datast ID Fig2b_E5.50_2
Dataset Kind Image data
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SSBD:OMERO
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# 4611
Datast ID Fig2b_E5.50_3
Dataset Kind Image data
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SSBD:OMERO
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# 4612
Datast ID Fig2b_E5.50_4
Dataset Kind Image data
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SSBD:OMERO
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# 4613
Datast ID Fig2c_E5.0
Dataset Kind Image data
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SSBD:OMERO
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# 4614
Datast ID Fig2d_E4.25
Dataset Kind Image data
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SSBD:OMERO
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# 4615
Datast ID Fig2e-g_E4.5
Dataset Kind Image data
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SSBD:OMERO
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# 4616
Datast ID Fig3a_5mC5hmc_E4.5
Dataset Kind Image data
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SSBD:OMERO
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# 4617
Datast ID Fig3a_5mC5hmc_E4.75
Dataset Kind Image data
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SSBD:OMERO
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# 4618
Datast ID Fig3a_5mC5hmc_E5.25
Dataset Kind Image data
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SSBD:OMERO
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# 4619
Datast ID Fig3b_H3K9me2_E4.5
Dataset Kind Image data
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SSBD:OMERO
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# 4620
Datast ID Fig3b_H3K9me2_E4.75
Dataset Kind Image data
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SSBD:OMERO
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# 4621
Datast ID Fig3b_H3K9me2_E5.5
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4622
Datast ID Fig3b_H3K9me3_E4.5
Dataset Kind Image data
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SSBD:OMERO
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# 4623
Datast ID Fig3b_H3K9me3_E4.75
Dataset Kind Image data
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SSBD:OMERO
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# 4624
Datast ID Fig3b_H3K9me3_E5.5
Dataset Kind Image data
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SSBD:OMERO
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# 4625
Datast ID Fig3c_H3K27me3_E3.5
Dataset Kind Image data
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SSBD:OMERO
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# 4626
Datast ID Fig3c_H3K27me3_E4.5
Dataset Kind Image data
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SSBD:OMERO
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# 4627
Datast ID Fig3c_H3K27me3_E4.75
Dataset Kind Image data
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SSBD:OMERO
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# 4628
Datast ID Fig3a_H3K27me3_E5.25
Dataset Kind Image data
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SSBD:OMERO
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# 4629
Datast ID Fig3d_E4.5
Dataset Kind Image data
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SSBD:OMERO
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# 4630
Datast ID Fig3d_E5.5
Dataset Kind Image data
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SSBD:OMERO
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# 4631
Datast ID FigS1a_E3.5_ICM-Epi
Dataset Kind Image data
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SSBD:OMERO
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# 4632
Datast ID FigS1a_E3.5_TE-ExE
Dataset Kind Image data
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SSBD:OMERO
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# 4633
Datast ID FigS1a_E3.75_ICM-Epi
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4634
Datast ID FigS1a_E3.75_PE-VE
Dataset Kind Image data
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SSBD:OMERO
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# 4635
Datast ID FigS1a_E3.75_TE-ExE
Dataset Kind Image data
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SSBD:OMERO
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# 4636
Datast ID FigS1a_E4.0_ICM-Epi
Dataset Kind Image data
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SSBD:OMERO
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# 4637
Datast ID FigS1a_E4.0_PE-VE
Dataset Kind Image data
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SSBD:OMERO
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# 4638
Datast ID FigS1a_E4.0_TE-ExE
Dataset Kind Image data
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SSBD:OMERO
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# 4639
Datast ID FigS1a_E4.25_ICM-Epi
Dataset Kind Image data
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SSBD:OMERO
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# 4640
Datast ID FigS1a_E4.25_PE-VE
Dataset Kind Image data
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SSBD:OMERO
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# 4641
Datast ID FigS1a_E4.25_TE-ExE
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4642
Datast ID FigS1a_E4.50_ICM-Epi
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4643
Datast ID FigS1a_E4.50_PE-VE
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4644
Datast ID FigS1a_E4.50_TE-ExE
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4645
Datast ID FigS1a_E4.75_ICM-Epi
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4646
Datast ID FigS1a_E4.75_PE-VE
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4647
Datast ID FigS1a_E4.75_TE-ExE
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4648
Datast ID FigS1a_E5.0_ICM-Epi
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4649
Datast ID FigS1a_E5.0_PE-VE
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4650
Datast ID FigS1a_E5.0_TE-ExE
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4651
Datast ID FigS1a_E5.25_ICM-Epi
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4652
Datast ID FigS1a_E5.25_PE-VE
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4653
Datast ID FigS1a_E5.25_TE-ExE
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4654
Datast ID FigS1a_E5.50_ICM-Epi
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4655
Datast ID FigS1a_E5.50_PE-VE
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4656
Datast ID FigS1a_E5.50_TE-ExE
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4657
Datast ID FigS1b_NANOG_GATA6_E4.0
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4658
Datast ID FigS2_Lamp2_1
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4659
Datast ID FigS2_Lamp2_2
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4660
Datast ID FigS2_Lamp2_3
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4661
Datast ID FigS2_Pgk1_1
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4662
Datast ID FigS2_Pgk1_2
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4663
Datast ID FigS3a_E5.25_1
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4664
Datast ID FigS3a_E5.25_2
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4665
Datast ID FigS3a_E5.25_3
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4666
Datast ID FigS3a_E5.50_1
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4667
Datast ID FigS3a_E5.50_2
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4668
Datast ID FigS3a_E5.50_3
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4669
Datast ID FigS3a_E5.50_4
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4670
Datast ID FigS3b_E5.5
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4671
Datast ID FigS3c_E5.5
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4672
Datast ID FigS4a_E5.5
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4673
Datast ID FigS4b_E5.5
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4674
Datast ID VideoS1_E5.5
Dataset Kind Image data
4D view
SSBD:OMERO
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# 4675
Datast ID VideoS2_E3.5
Dataset Kind Image data
4D view
SSBD:OMERO
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