Summary of 110-Makino-MembraneDyn

SSBD:database
SSBD:database URL
Title
Immunoelectron microscopic images of nakanori distribution in HeLa cells, human skin fibroblasts and NPC cells
Description
-
Relase date
2018-11-14
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
10 ( Image datasets: 10, Quantitative data datasets: 0 )
Size of Datasets
60.2 MB ( Image datasets: 60.2 MB, Quantitative data datasets: 0 bytes )

Organism(s)
H. sapiens
Strain(s)
fibroblast, HeLa , NPC

Datatype
membrane nakanori distribution
Molecular Function (MF)
Biological Process (BP)
protein lipid complex assembly
Cellular Component (CC)
plasma membrane, protein lipid complex
Biological Imaging Method
-
XYZ Scale
XY: 1.47 nanometer/pixel, Z: NA, XY: 23.81 nanoometer/pixel, Z: NA, XY: 1.84 nanometer/pixel, Z: NA, XY: 4.98 nanometer/pixel, Z: NA, XY: 0.31 nanometer/pixel, Z: NA, XY: 14.62 nanometer/pixel, Z: NA, XY: 23.81 nanometer/pixel, Z: NA, XY: 0.62 nanometer/pixel, Z: NA, XY: 0.83 nanometer/pixel, Z: NA
T scale
-

Image Acquisition
Experiment type
Other
Microscope type
Other
Acquisition mode
BrightField
Contrast method
Brightfield
Microscope model
JEOL1200 EX-II, JEM1230
Detector model
Imaging Plate and Fujifilm FDL5000, Olympus-SIS Veleta
Objective model
-
Filter set
-

Related paper(s)

Asami Makino, Mitsuhiro Abe, Reiko Ishitsuka, Motohide Murate, Takuma Kishimoto, Shota Sakai, Francoise Hullin-Matsuda, Yukiko Shimada, Takehiko Inaba, Hideyuki Miyatake, Hideko Tanaka, Atsushi Kurahashi, Chan-Gi Pack, Rinshi S Kasai, Shuku Kubo, Nicole L Schieber, Naoshi Dohmae, Naoya Tochio, Kyoji Hagiwara, Yutaka Sasaki, Yoko Aida, Fumihiro Fujimori, Takanori Kigawa, Kozo Nishibori, Robert G Parton, Akihiro Kusumi, Yasushi Sako, Gregor Anderluh, Makoto Yamashita, Tetsuyuki Kobayashi, Peter Greimel, Toshihide Kobayashi (2017) A novel sphingomyelin/cholesterol domain-specific probe reveals the dynamics of the membrane domains during virus release and in Niemann-Pick type C., FASEB journal : official publication of the Federation of American Societies for Experimental Biology, Volume 31, Number 4, pp. 1301-1322

Published in 2017 Apr (Electronic publication in Aug. 4, 2016, midnight )

(Abstract) We identified a novel, nontoxic mushroom protein that specifically binds to a complex of sphingomyelin (SM), a major sphingolipid in mammalian cells, and cholesterol (Chol). The purified protein, termed nakanori, labeled cell surface domains in an SM- and Chol-dependent manner and decorated specific lipid domains that colocalized with inner leaflet small GTPase H-Ras, but not K-Ras. The use of nakanori as a lipid-domain-specific probe revealed altered distribution and dynamics of SM/Chol on the cell surface of Niemann-Pick type C fibroblasts, possibly explaining some of the disease phenotype. In addition, that nakanori treatment of epithelial cells after influenza virus infection potently inhibited virus release demonstrates the therapeutic value of targeting specific lipid domains for anti-viral treatment.-Makino, A., Abe, M., Ishitsuka, R., Murate, M., Kishimoto, T., Sakai, S., Hullin-Matsuda, F., Shimada, Y., Inaba, T., Miyatake, H., Tanaka, H., Kurahashi, A., Pack, C.-G., Kasai, R. S., Kubo, S., Schieber, N. L., Dohmae, N., Tochio, N., Hagiwara, K., Sasaki, Y., Aida, Y., Fujimori, F., Kigawa, T., Nishibori, K., Parton, R. G., Kusumi, A., Sako, Y., Anderluh, G., Yamashita, M., Kobayashi, T., Greimel, P., Kobayashi, T. A novel sphingomyelin/cholesterol domain-specific probe reveals the dynamics of the membrane domains during virus release and in Niemann-Pick type C.
(MeSH Terms)

Contact
Toshihide Kobayashi , University of Strasbourg , Faculty of pharmacy , UMR 7021 CNRS
Contributors
Asami Makino, Mitsuhiro Abe, Reiko Ishitsuka, Motohide Murate, Takuma Kishimoto, Shota Sakai, Françoise Hullin-Matsuda, Yukiko Shimada, Takehiko Inaba, Hideyuki Miyatake, Hideko Tanaka, Atsushi Kurahashi, Chan-Gi Pack, Rinshi S. Kasai, Shuku Kubo, Nicole L. Schieber, Naoshi Dohmae, Naoya Tochio, Kyoji Hagiwara, Yutaka Sasaki, Yoko Aida, Fumihiro Fujimori, Takanori Kigawa, Kozo Nishibori, Robert G. Parton, Akihiro Kusumi, Yasushi Sako, Gregor Anderluh, Makoto Yamashita, Tetsuyuki Kobayashi, Peter Greimel, Toshihide Kobayashi


Dataset List of 110-Makino-MembraneDyn

#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
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# 4450
Datast ID fig6A_cryosection
Dataset Kind Image data
Dataset Size 10.8 MB
4D view
SSBD:OMERO
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# 4451
Dataset Kind Image data
Dataset Size 4.0 MB
4D view
SSBD:OMERO
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# 4452
Datast ID fig8B_cryosection
Dataset Kind Image data
Dataset Size 10.8 MB
4D view
SSBD:OMERO
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# 4453
Dataset Kind Image data
Dataset Size 10.8 MB
4D view
SSBD:OMERO
Download BDML
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# 4454
Datast ID fig11C_normal_1
Dataset Kind Image data
Dataset Size 4.0 MB
4D view
SSBD:OMERO
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# 4455
Datast ID fig11C_normal_2
Dataset Kind Image data
Dataset Size 4.0 MB
4D view
SSBD:OMERO
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# 4456
Datast ID fig11C_normal_3
Dataset Kind Image data
Dataset Size 4.0 MB
4D view
SSBD:OMERO
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# 4457
Datast ID fig11C_NPC_1
Dataset Kind Image data
Dataset Size 4.0 MB
4D view
SSBD:OMERO
Download BDML
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# 4458
Datast ID fig11C_NPC_2
Dataset Kind Image data
Dataset Size 4.0 MB
4D view
SSBD:OMERO
Download BDML
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# 4459
Datast ID fig11C_NPC_3
Dataset Kind Image data
Dataset Size 4.0 MB
4D view
SSBD:OMERO
Download BDML
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