Detail of Fig7D_hmx1_PCB_125uM



Project
SSBD:Repository
Title
Time-series images of hmx1Δ budding yeast cells cultured in liquid YPDA with 125 uM PCB.
Description
Time-series images of hmx1Δ budding yeast cells cultured in liquid YPDA with 125 uM PCB.
Release, Updated
2022-03-31
License
CC BY
Kind
Image data
File Formats
.TIF
Data size
61.0 MB

Organism
Saccharomyces cerevisiae ( NCBI:txid4932 )
Strain(s)
SK483
Cell Line
-
Gene symbols
hmx1

Datatype
-
Molecular Function (MF)
biliverdin reductase (NAD(P)+) activity ( GO:0004074 )
Biological Process (BP)
phycocyanobilin biosynthetic process ( GO:0140609 )
Cellular Component (CC)
-
Biological Imaging Method
confocal microscopy ( Fbbi:00000251 )
X scale
-
Y scale
-
Z scale
-
T scale
-

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Summary of Methods
See details in Sakai K, et. al. (2021) J Cell Sci, jcs.259315.
Related paper(s)

Keiichiro Sakai, Yohei Kondo, Hiroyoshi Fujioka, Mako Kamiya, Kazuhiro Aoki, Yuhei Goto (2021) Near-infrared imaging in fission yeast using a genetically encoded phycocyanobilin biosynthesis system., Journal of cell science, Volume 134, Number 24

Published in 2021 Dec 15 (Electronic publication in Dec. 16, 2021, midnight )

(Abstract) Near-infrared fluorescent protein (iRFP) is a bright and stable fluorescent protein with near-infrared excitation and emission maxima. Unlike the other conventional fluorescent proteins, iRFP requires biliverdin (BV) as a chromophore. Here, we report that phycocyanobilin (PCB) functions as a brighter chromophore for iRFP than BV, and that biosynthesis of PCB allows live-cell imaging with iRFP in the fission yeast Schizosaccharomyces pombe. We initially found that fission yeast cells did not produce BV and therefore did not show any iRFP fluorescence. The brightness of iRFP-PCB was higher than that of iRFP-BV both in vitro and in fission yeast. We introduced SynPCB2.1, a PCB biosynthesis system, into fission yeast, resulting in the brightest iRFP fluorescence. To make iRFP readily available in fission yeast, we developed an endogenous gene tagging system with iRFP and all-in-one integration plasmids carrying the iRFP-fused marker proteins together with SynPCB2.1. These tools not only enable the easy use of multiplexed live-cell imaging in fission yeast with a broader color palette, but also open the door to new opportunities for near-infrared fluorescence imaging in a wider range of living organisms. This article has an associated First Person interview with the first author of the paper.
(MeSH Terms)

Contact
Kazuhiro Aoki , Yuhei Goto , National Institutes of Natural Sciences , National Institutes of Natural Sciences , Exploratory Research Center on Life and Living Systems (ExCELLS) , Exploratory Research Center on Life and Living Systems (ExCELLS) , Quantitative Biology Research Group , Quantitative Biology Research Group
Contributors

OMERO Dataset
OMERO Project
Source