Detail of GSE24775_PP_SD_rep2.omicsbdml0.18



Project
Title
OmicsBDML file of Genome-wide expression analysis of the mouse pars tuberalis (PT) under chronic short-day condition
Description
Gene expression data from mice pars tuberalis in the short day condition
Release, Updated
2014-10-03,
2017-10-03
License
CC BY-SA
Kind
Quantitative data based on Experiment
File Formats
Data size
6.1 MB

Organism
M. musculus ( NCBI:txid10090 )
Strain(s)
-
Cell Line
-

Datatype
gene expression data
Molecular Function (MF)
Biological Process (BP)
-
Cellular Component (CC)
-
Biological Imaging Method
XYZ Scale
-
T scale
-

Image Acquisition
Experiment type
Other
Microscope type
Other
Acquisition mode
Other
Contrast method
Other
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Summary of Methods
See details in Masumoto et al. (2010) Current Biology, 20(24): 2199-2206.
Related paper(s)

Koh-Hei Masumoto, Maki Ukai-Tadenuma, Takeya Kasukawa, Mamoru Nagano, Kenichiro D Uno, Kaori Tsujino, Kazumasa Horikawa, Yasufumi Shigeyoshi, Hiroki R Ueda (2010) Acute induction of Eya3 by late-night light stimulation triggers TSHbeta expression in photoperiodism., Current biology : CB, Volume 20, Number 24, pp. 2199-206

Published in 2010 Dec 21 (Electronic publication in Dec. 2, 2010, midnight )

(Abstract) Living organisms detect seasonal changes in day length (photoperiod) [1-3] and alter their physiological functions accordingly to fit seasonal environmental changes. TSHbeta, induced in the pars tuberalis (PT), plays a key role in the pathway that regulates vertebrate photoperiodism [4, 5]. However, the upstream inducers of TSHbeta expression remain unknown. Here we performed genome-wide expression analysis of the PT under chronic short-day and long-day conditions in melatonin-proficient CBA/N mice, in which the photoperiodic TSHbeta expression response is preserved [6]. This analysis identified "short-day" and "long-day" genes, including TSHbeta, and further predicted the acute induction of long-day genes by late-night light stimulation. We verified this by advancing and extending the light period by 8 hr, which induced TSHbeta expression within one day. In the following genome-wide expression analysis under this acute long-day condition, we searched for candidate upstream genes by looking for expression that preceded TSHbeta's, and we identified the Eya3 gene. We demonstrated that Eya3 and its partner Six1 synergistically activate TSHbeta expression and that this activation is further enhanced by Tef and Hlf. These results elucidate the comprehensive transcriptional photoperiodic response in the PT, revealing the complex regulation of TSHbeta expression and unexpectedly rapid response to light changes in the mammalian photoperiodic system.
(MeSH Terms)

Contact
Hiroki R. Ueda , RIKEN , Center for Developmental Biolog , Functional Genomics Unit
Contributors
Hiroki R. Ueda, Koh-hei Masumoto, Maki Ukai-Tadenuma, Takeya Kasukawa, Mamoru Nagano, Kenichiro D. Uno, Kaori Tsujino, Kazumasa Horikawa, Yasufumi Shigeyoshi

Local ID
GSE24775_PP_SD_rep2
BDML ID
04eb03ae-a5d5-4c80-bfa0-4194f3c1e220
BDML/BD5