Detail of Fig3F_whorled arrange_1



Project
SSBD:Repository
Title
Z-series images of Coryne uchidai
Description
Z-series images of Coryne uchidai for the quantitative analysis of tentacle arrangements. XXX.lif file contains 3D imaging data of Coryne uchidai. It is used to obtain the coordinates (X, Y, Z) of the tentacle bases, starting from the mouth as the reference point. XXX.lifext file includes some series of data from different X, Y positions, with the last series containing the complete tiling data. The morphology of Coryne uchidai was visualized with DAPI-staining.
Release, Updated
2025-11-26
License
CC BY
Kind
Image data
File Formats
.lif, .lifext
Data size
4.7 GB

Organism
Coryne uchidai ( NCBI:txid662077 )
Strain(s)
-
Cell Line
-

Datatype
-
Molecular Function (MF)
Biological Process (BP)
anatomical structure formation involved in morphogenesis
Cellular Component (CC)
Biological Imaging Method
confocal microscopy ( Fbbi:00000251 )
X scale
0.76 micrometer
Y scale
0.76 micrometer
Z scale
1.04 micrometer
T scale
-

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Summary of Methods
Sarper SE, Kitazawa MS, Nakanishi T, Fujimoto K. Size-correlated polymorphisms in phyllotaxis-like periodic and symmetric tentacle arrangements in hydrozoan Coryne uchidai. Front Cell Dev Biol. 2023 Nov 22:11:1284904.
Related paper(s)

Safiye E Sarper, Miho S Kitazawa, Tamami Nakanishi, Koichi Fujimoto (2023) Size-correlated polymorphisms in phyllotaxis-like periodic and symmetric tentacle arrangements in hydrozoan Coryne uchidai., Frontiers in cell and developmental biology, Volume 11, pp. 1284904

Published in 2023 (Electronic publication in Nov. 22, 2023, midnight )

(Abstract) Introduction: Periodic organ arrangements occur during growth and development and are widespread in animals and plants. In bilaterian animals, repetitive organs can be interpreted as being periodically arranged along the two-dimensional space and defined by two body axes; on the other hand, in radially symmetrical animals and plants, organs are arranged in the three-dimensional space around the body axis and around plant stems, respectively. The principles of periodic organ arrangement have primarily been investigated in bilaterians; however, studies on this phenomenon in radially symmetrical animals are scarce. Methods: In the present study, we combined live imaging, quantitative analysis, and mathematical modeling to elucidate periodic organ arrangement in a radially symmetrical animal, Coryne uchidai (Cnidaria, Hydrozoa). Results: The polyps of C. uchidai simultaneously formed multiple tentacles to establish a regularly angled, ring-like arrangement with radial symmetry. Multiple rings periodically appeared throughout the body and mostly maintained symmetry. Furthermore, we observed polymorphisms in symmetry type, including tri-, tetra-, and pentaradial symmetries, as individual variations. Notably, the types of radial symmetry were positively correlated with polyp diameter, with a larger diameter in pentaradial polyps than in tetra- and triradial ones. Our mathematical model suggested the selection of size-correlated radial symmetry based on the activation-inhibition and positional information from the mouth of tentacle initiation. Discussion: Our established quantification methods and mathematical model for tentacle arrangements are applicable to other radially symmetrical animals, and will reveal the widespread association between size-correlated symmetry and periodic arrangement principles.

Contact
Safiye E. Sarper , RIKEN , Laboratory for Evolutionary Morphology, Center for Biosystems Dynamics Research , Laboratory for Evolutionary Morphology, Center for Biosystems Dynamics Research
Contributors
Miho S. Kitazawa, Tamami Nakanishi, Koichi Fujimoto

OMERO Dataset
OMERO Project
Source