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Summary of 73-Fujii-NeuronalMolDynCa2


SSBD:database
SSBD:database URL
Title
The simple stochastic model of Ca2+ increasing in the spine volume and cell volume
Description
-
Release date
2018-11-15
Updated date
-
License
NA
Kind
Quantitative data based on Simulation
Number of Datasets
100 ( Image datasets: 0, Quantitative data datasets: 100 )
Size of Datasets
1.1 GB ( Image datasets: 0 bytes, Quantitative data datasets: 1.1 GB )

Organism(s)

Datatype
molecular dynamics
Molecular Function (MF)
Biological Process (BP)
-
Cellular Component (CC)
neuron spine
Biological Imaging Method
-
XYZ Scale
-
T scale
1 millisecond for each time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Masashi Fujii, Kaoru Ohashi, Yasuaki Karasawa, Minori Hikichi, Shinya Kuroda (2017) Small-Volume Effect Enables Robust, Sensitive, and Efficient Information Transfer in the Spine., Biophysical journal, Volume 112, Number 4, pp. 813-826

Published in 2017 Feb 28

(Abstract) Why is the spine of a neuron so small that it can contain only small numbers of molecules and reactions inevitably become stochastic? We previously showed that, despite such noisy conditions, the spine exhibits robust, sensitive, and efficient features of information transfer using the probability of Ca(2+) increase; however, the mechanisms are unknown. In this study, we show that the small volume effect enables robust, sensitive, and efficient information transfer in the spine volume, but not in the cell volume. In the spine volume, the intrinsic noise in reactions becomes larger than the extrinsic noise of input, resulting in robust information transfer despite input fluctuation. In the spine volume, stochasticity makes the Ca(2+) increase occur with a lower intensity of input, causing higher sensitivity to lower intensity of input. The volume-dependency of information transfer increases its efficiency in the spine volume. Thus, we propose that the small-volume effect is the functional reason why the spine has to be so small.
(MeSH Terms)

Contact
Shinya Kuroda, Masashi Fujii , Graduate School of Sciences, University of Tokyo , Department of Biological Sciences , Systems Biology (Kuroda Lab)
Contributors
Masashi Fujii, Kaoru Ohashi, Yasuaki Karasawa, Minori Hikichi, Shinya Kuroda

Dataset List of 73-Fujii-NeuronalMolDynCa2

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Kind
Size
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# 3899
Datast ID seed.0
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3900
Datast ID seed.1
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3901
Datast ID seed.2
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3902
Datast ID seed.3
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3903
Datast ID seed.4
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3904
Datast ID seed.5
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3905
Datast ID seed.6
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3906
Datast ID seed.7
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3907
Datast ID seed.8
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3908
Datast ID seed.9
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3909
Datast ID seed.10
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3910
Datast ID seed.11
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3911
Datast ID seed.12
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3912
Datast ID seed.13
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3913
Datast ID seed.14
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3914
Datast ID seed.15
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3915
Datast ID seed.16
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3916
Datast ID seed.17
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3917
Datast ID seed.18
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3918
Datast ID seed.19
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3919
Datast ID seed.20
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3920
Datast ID seed.21
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3921
Datast ID seed.22
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3922
Datast ID seed.23
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3923
Datast ID seed.24
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3924
Datast ID seed.25
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3925
Datast ID seed.26
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3926
Datast ID seed.27
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3927
Datast ID seed.28
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3928
Datast ID seed.29
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3929
Datast ID seed.30
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3930
Datast ID seed.31
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3931
Datast ID seed.32
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3932
Datast ID seed.33
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3933
Datast ID seed.34
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3934
Datast ID seed.35
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3935
Datast ID seed.36
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3936
Datast ID seed.37
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3937
Datast ID seed.38
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3938
Datast ID seed.39
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3939
Datast ID seed.40
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3940
Datast ID seed.41
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3941
Datast ID seed.42
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3942
Datast ID seed.43
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3943
Datast ID seed.44
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3944
Datast ID seed.45
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3945
Datast ID seed.46
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3946
Datast ID seed.47
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3947
Datast ID seed.48
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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# 3948
Datast ID seed.49
Dataset Kind Quantitative data
Dataset Size 11.3 MB
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SSBD:OMERO
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