Summary of 72-Kyogoku-CytoplasmNucDyn


SSBD:database
SSBD:database URL

SSBD:repository
SSBD:repository URL

Title
Timelapse images and BDML file for quantitative information about the cytoplasmic size affecting nuclear dynamics during mouse oocytes meiosis
Description
-
Release date
2021-11-30
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
453 ( Image datasets: 453, Quantitative data datasets: 0 )
Size of Datasets
6.7 TB ( Image datasets: 6.7 TB, Quantitative data datasets: 0 bytes )

Organism(s)
Mus musculus
Gene symbol(s)
C-Mad2, Hec-1, Hec1
Protein name(s)
ACA, Aurora B/C, CENP-C, CENP-E, H2B, MCAK, Securin
Protein tag(s)
2mNeonGreen, EGFP, mCherry, mNeonGreen, mNeonGreen. mCherry

Datatype
-
Molecular Function (MF)
-
Biological Process (BP)
cytoplasm organization, nuclear envelope breakdown, mitotic cell cycle
Cellular Component (CC)
chromosome, kinetochore microtubule
Biological Imaging Method
time lapse microscopy, fluorescence microscopy
X scale
0.0527153 micrometer/pixel, 0.1037832 micrometer/pixel, 0.1037832 micrometer/pixel, 0.0922518 micrometer/pixel, 0.2075665 micrometer/pixel, 0.0691888 micrometer/pixel, 0.4151329 micrometer/pixel, 0.0415133 micrometer/pixel, 0.0638666 micrometer/pixel, 0.0593047 micrometer/pixel, 0.1383776 micrometer/pixel, 0.1186094 micrometer/pixel, 0.1660532 micrometer/pixel, 0.0830266 micrometer/pixel
Y scale
0.0527153 micrometer/pixel, 0.1037832 micrometer/pixel, 0.1037832 micrometer/pixel, 0.0922518 micrometer/pixel, 0.2075665 micrometer/pixel, 0.0691888 micrometer/pixel, 0.4151329 micrometer/pixel, 0.0415133 micrometer/pixel, 0.0638666 micrometer/pixel, 0.0593047 micrometer/pixel, 0.1383776 micrometer/pixel, 0.1186094 micrometer/pixel, 0.1660532 micrometer/pixel, 0.0830266 micrometer/pixel
Z scale
1 micrometer/slice, 4 micrometer/slice, 0.3791020 micrometer/slice, 0.5 micrometer/slice, 0.3125801 micrometer/slice, 1.5 micrometer/slice
T scale
2 minutes for each time interval, 3 minutes for each time interval, 6 minutes for each time interval, NA, 5 minutes for each time interval, 1 minute for each time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Hirohisa Kyogoku, Tomoya S Kitajima (2017) Large Cytoplasm Is Linked to the Error-Prone Nature of Oocytes., Developmental cell, Volume 41, Number 3, pp. 287-298.e4

Published in 2017 May 8

(Abstract) Chromosome segregation during meiosis in oocytes is error prone. The uniquely large cytoplasmic size of oocytes, which provides support for embryogenesis after fertilization, might be a predisposing factor for meiotic errors. However, this hypothesis remains unproven. Here, we show that cytoplasmic size affects the functionality of the acentrosomal spindle. Artificially decreasing the cytoplasmic size in mouse oocytes allows the acentrosomal spindle poles to have a better-focused distribution of microtubule-organizing centers and to biorient chromosomes more efficiently, whereas enlargement of the cytoplasmic size has the opposite effects. Moreover, we found that the cytoplasmic size-dependent dilution of nuclear factors, including anaphase inhibitors that are preformed at the nuclear membrane, limits the spindle's capacity to prevent anaphase entry with misaligned chromosomes. The present study defines a large cytoplasmic volume as a cell-intrinsic feature linked to the error-prone nature of oocytes. This may represent a trade-off between meiotic fidelity and post-fertilization developmental competence.
(MeSH Terms)

Contact
Tomoya S. Kitajima , RIKEN , Center for Biosystems Dynamics Research , Laboratory for Chromosome Segregation
Contributors
NA

Dataset List of 72-Kyogoku-CytoplasmNucDyn

Thumbnail
#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
Download Images
Thumbnail Thumbnail for dataset Figure1B_control
# 6377
Datast ID Figure1B_control
Dataset Kind Image data
Dataset Size 243.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure1B_control_EGFP
# 6378
Dataset Kind Image data
Dataset Size 202.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure1B_Doubled_cytoplasmic
# 6379
Dataset Kind Image data
Dataset Size 205.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure1B_Doubled_cytoplasmic_EGFP
# 6380
Dataset Kind Image data
Dataset Size 202.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure1B_Half_cytoplasmic
# 6381
Dataset Kind Image data
Dataset Size 243.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure1B_Half_cytoplasmic_EGFP
# 6382
Dataset Kind Image data
Dataset Size 202.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure1C_2013_12_19
# 6383
Dataset Kind Image data
Dataset Size 111.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure1C_2014_1_31
# 6384
Datast ID Figure1C_2014_1_31
Dataset Kind Image data
Dataset Size 147.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure1C_2014_3_19
# 6385
Datast ID Figure1C_2014_3_19
Dataset Kind Image data
Dataset Size 164.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure1C_2014_4_2
# 6386
Datast ID Figure1C_2014_4_2
Dataset Kind Image data
Dataset Size 130.7 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure2B_2015_8_6
# 6387
Datast ID Figure2B_2015_8_6
Dataset Kind Image data
Dataset Size 50.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure2B_2015_8_10
# 6388
Datast ID Figure2B_2015_8_10
Dataset Kind Image data
Dataset Size 62.6 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure2B_2015_8_13
# 6389
Datast ID Figure2B_2015_8_13
Dataset Kind Image data
Dataset Size 60.0 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure2B_Halved_After_NEBD
# 6390
Dataset Kind Image data
Dataset Size 179.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure2B_Halved_Before_NEBD
# 6391
Dataset Kind Image data
Dataset Size 178.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure2C_2015_11_20_after
# 6392
Dataset Kind Image data
Dataset Size 17.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure2C_2015_11_20_before
# 6393
Dataset Kind Image data
Dataset Size 17.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure2D_2015_11_17
# 6394
Dataset Kind Image data
Dataset Size 43.6 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure2D_2015_11_18
# 6395
Dataset Kind Image data
Dataset Size 26.5 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure2D_2015_11_18_after
# 6396
Dataset Kind Image data
Dataset Size 68.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure2D_2015_11_18_before
# 6397
Dataset Kind Image data
Dataset Size 68.6 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure2D_2015_11_20
# 6398
Dataset Kind Image data
Dataset Size 77.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure2D_2015_12_9
# 6399
Datast ID Figure2D_2015_12_9
Dataset Kind Image data
Dataset Size 40.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure2D_2015_12_9_after
# 6400
Dataset Kind Image data
Dataset Size 85.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure2D_2015_12_9_before
# 6401
Dataset Kind Image data
Dataset Size 85.8 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure2D_2016_2_10
# 6402
Datast ID Figure2D_2016_2_10
Dataset Kind Image data
Dataset Size 63.7 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure2D_2016_2_17
# 6403
Datast ID Figure2D_2016_2_17
Dataset Kind Image data
Dataset Size 107.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure3A_doubled
# 6404
Datast ID Figure3A_doubled
Dataset Kind Image data
Dataset Size 1.0 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure3A_EFcontrol
# 6405
Datast ID Figure3A_EFcontrol
Dataset Kind Image data
Dataset Size 357.1 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure3A_Half
# 6406
Datast ID Figure3A_Half
Dataset Kind Image data
Dataset Size 1.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure3BC_2015_12_10_2
# 6407
Dataset Kind Image data
Dataset Size 117.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure3BC_2015_12_16
# 6408
Dataset Kind Image data
Dataset Size 110.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure3BC_2015_12_18
# 6409
Dataset Kind Image data
Dataset Size 127.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure3BC_2016_1_4
# 6410
Datast ID Figure3BC_2016_1_4
Dataset Kind Image data
Dataset Size 127.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure3BC_2016_1_5
# 6411
Datast ID Figure3BC_2016_1_5
Dataset Kind Image data
Dataset Size 127.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure3BC_2016_1_6
# 6412
Datast ID Figure3BC_2016_1_6
Dataset Kind Image data
Dataset Size 127.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure3BC_Double_20151220_L1_MTOC
# 6413
Dataset Kind Image data
Dataset Size 1.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure3BC_Double_20151220_L3_MTOC
# 6414
Dataset Kind Image data
Dataset Size 1.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure3BC_Double_20151220_L4_MTOC
# 6415
Dataset Kind Image data
Dataset Size 1.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure3BC_Double_20151220_L5_MTOC
# 6416
Dataset Kind Image data
Dataset Size 1.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure3BC_Double_20151220_L6_MTOC
# 6417
Dataset Kind Image data
Dataset Size 725.2 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure3BC_Double_20151220_L7
# 6418
Dataset Kind Image data
Dataset Size 1.1 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure3BC_Double_20151220_L10_MTOC
# 6419
Dataset Kind Image data
Dataset Size 1.3 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure3BC_Double_20151220_L11_MTOC
# 6420
Dataset Kind Image data
Dataset Size 1.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure3BC_Double_20151220_L12_MTOC
# 6421
Dataset Kind Image data
Dataset Size 900.7 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure3BC_Double_20151220_L13_MTOC
# 6422
Dataset Kind Image data
Dataset Size 1.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure3BC_Double_20151220_L14_MTOC
# 6423
Dataset Kind Image data
Dataset Size 1.2 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_2016_2_23
# 6424
Dataset Kind Image data
Dataset Size 70.8 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_2016_2_25
# 6425
Dataset Kind Image data
Dataset Size 70.8 GB
4D view
SSBD:OMERO
Download BDML
Download Image data

Thumbnail Thumbnail for dataset Figure5D_KTtracking_2016_5_27
# 6426
Dataset Kind Image data
Dataset Size 118.7 GB
4D view
SSBD:OMERO
Download BDML
Download Image data