SSBD:database

Thumbnail for 331-Shimojo-MouseBrainAnatomicalRegion

Summary of 331-Shimojo-MouseBrainAnatomicalRegion

SSBD:database
331-Shimojo-MouseBrainAnatomicalRegion
SSBD:database URL
https://ssbd.riken.jp/database/331-Shimojo-MouseBrainAnatomicalRegion/
DOI
https://doi.org/10.24631/ssbd.db.2023.12.331
SSBD:repository
ssbd-repos-000331
SSBD:repository URL
https://ssbd.riken.jp/repository/331/
Title
Semantic segmentation data of eight anatomical regions for mouse brain slices with neurogenic-tagged neurons from NeuroGT database
Description
-
Release date
2023-12-24
Updated date
-
License
CC BY
Kind
Quantitative data based on Experiment
Number of Datasets
84 ( Image datasets: 0, Quantitative data datasets: 84 )
Size of Datasets
52.4 GB ( Image datasets: 0 bytes, Quantitative data datasets: 52.4 GB )
Organism(s)
Mus musculus
Strain(s)
C57BL/6 Neurod1^{CreER}(D1B); Tau^{mGFP-nLacZ}, C57BL/6 neuroG2^{CreER}(G2A); Tau^{mGFP-nLacZ}, C57BL/6 Neurod4^{CreER}(D4A); Tau^{mGFP-nLacZ}, C57BL/6 Neurog1^{CreER}(G1C); Tau^{mGFP-nLacZ}
Datatype
-
Molecular Function (MF)
Biological Process (BP)
nervous system development
Cellular Component (CC)
neuron projection, plasma membrane
Biological Imaging Method
-
X scale
1.0 micrometer/pixel
Y scale
1.0 micrometer/pixel
Z scale
20 micrometer/slice
T scale
-
Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-
Related paper(s)

Shimojo,Yuki, Suehara,Kazuki, Hirata,Tatsumi, Tohsato,Yukako (2024) Segmentation of Mouse Brain Slices with Unsupervised Domain Adaptation Considering Cross-sectional Locations, IPSJ Transactions on Bioinformatics, Volume 17, Number , 33-39

Published in 2024

(Abstract) None
Contact
Yukako Tohsato , Ritsumeikan University , Faculty of Information Science and Engineering , Laboratory of compubational biology
Contributors
Yuki Shimojo, Kazuki Suehara, Tatsumi Hirata, Yukako Tohsato

Dataset List of 331-Shimojo-MouseBrainAnatomicalRegion

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#
Dataset ID
Kind
Size
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Thumbnail Thumbnail for dataset D1BN_TM9.5_G
# 11009
Datast ID D1BN_TM9.5_G
Dataset Kind Quantitative data
Dataset Size 594.4 MB
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Thumbnail Thumbnail for dataset D1BN_TM9.5_L
# 11010
Datast ID D1BN_TM9.5_L
Dataset Kind Quantitative data
Dataset Size 624.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM10.5_G
# 11011
Datast ID D1BN_TM10.5_G
Dataset Kind Quantitative data
Dataset Size 571.4 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM10.5_L
# 11012
Datast ID D1BN_TM10.5_L
Dataset Kind Quantitative data
Dataset Size 510.2 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM11.5_G
# 11013
Datast ID D1BN_TM11.5_G
Dataset Kind Quantitative data
Dataset Size 565.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM11.5_L
# 11014
Datast ID D1BN_TM11.5_L
Dataset Kind Quantitative data
Dataset Size 561.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM12.5_G
# 11015
Datast ID D1BN_TM12.5_G
Dataset Kind Quantitative data
Dataset Size 655.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM12.5_L
# 11016
Datast ID D1BN_TM12.5_L
Dataset Kind Quantitative data
Dataset Size 636.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM13.5_G
# 11017
Datast ID D1BN_TM13.5_G
Dataset Kind Quantitative data
Dataset Size 580.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM13.5_L
# 11018
Datast ID D1BN_TM13.5_L
Dataset Kind Quantitative data
Dataset Size 611.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM14.5_G
# 11019
Datast ID D1BN_TM14.5_G
Dataset Kind Quantitative data
Dataset Size 581.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM14.5_L
# 11020
Datast ID D1BN_TM14.5_L
Dataset Kind Quantitative data
Dataset Size 579.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM15.5_G
# 11021
Datast ID D1BN_TM15.5_G
Dataset Kind Quantitative data
Dataset Size 603.4 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM15.5_L
# 11022
Datast ID D1BN_TM15.5_L
Dataset Kind Quantitative data
Dataset Size 587.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM16.5_G
# 11023
Datast ID D1BN_TM16.5_G
Dataset Kind Quantitative data
Dataset Size 778.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM16.5_L
# 11024
Datast ID D1BN_TM16.5_L
Dataset Kind Quantitative data
Dataset Size 672.4 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM17.5_G
# 11025
Datast ID D1BN_TM17.5_G
Dataset Kind Quantitative data
Dataset Size 708.4 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_TM17.5_L
# 11026
Datast ID D1BN_TM17.5_L
Dataset Kind Quantitative data
Dataset Size 700.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_woTM_G
# 11027
Datast ID D1BN_woTM_G
Dataset Kind Quantitative data
Dataset Size 634.8 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D1BN_woTM_L
# 11028
Datast ID D1BN_woTM_L
Dataset Kind Quantitative data
Dataset Size 634.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM8.5_G
# 11029
Datast ID D4AN_TM8.5_G
Dataset Kind Quantitative data
Dataset Size 655.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM8.5_L
# 11030
Datast ID D4AN_TM8.5_L
Dataset Kind Quantitative data
Dataset Size 655.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM9.5_G
# 11031
Datast ID D4AN_TM9.5_G
Dataset Kind Quantitative data
Dataset Size 692.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM9.5_L
# 11032
Datast ID D4AN_TM9.5_L
Dataset Kind Quantitative data
Dataset Size 694.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM10.5_G
# 11033
Datast ID D4AN_TM10.5_G
Dataset Kind Quantitative data
Dataset Size 575.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM10.5_L
# 11034
Datast ID D4AN_TM10.5_L
Dataset Kind Quantitative data
Dataset Size 572.3 MB
4D view
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Thumbnail Thumbnail for dataset D4AN_TM11.5_G
# 11035
Datast ID D4AN_TM11.5_G
Dataset Kind Quantitative data
Dataset Size 653.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM11.5_L
# 11036
Datast ID D4AN_TM11.5_L
Dataset Kind Quantitative data
Dataset Size 628.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM12.5_G
# 11037
Datast ID D4AN_TM12.5_G
Dataset Kind Quantitative data
Dataset Size 613.7 MB
4D view
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Thumbnail Thumbnail for dataset D4AN_TM12.5_L
# 11038
Datast ID D4AN_TM12.5_L
Dataset Kind Quantitative data
Dataset Size 595.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM13.5_G
# 11039
Datast ID D4AN_TM13.5_G
Dataset Kind Quantitative data
Dataset Size 761.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM13.5_L
# 11040
Datast ID D4AN_TM13.5_L
Dataset Kind Quantitative data
Dataset Size 741.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM14.5_G
# 11041
Datast ID D4AN_TM14.5_G
Dataset Kind Quantitative data
Dataset Size 567.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM14.5_L
# 11042
Datast ID D4AN_TM14.5_L
Dataset Kind Quantitative data
Dataset Size 579.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM15.5_G
# 11043
Datast ID D4AN_TM15.5_G
Dataset Kind Quantitative data
Dataset Size 526.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM15.5_L
# 11044
Datast ID D4AN_TM15.5_L
Dataset Kind Quantitative data
Dataset Size 517.8 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM16.5_G
# 11045
Datast ID D4AN_TM16.5_G
Dataset Kind Quantitative data
Dataset Size 668.3 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM16.5_L
# 11046
Datast ID D4AN_TM16.5_L
Dataset Kind Quantitative data
Dataset Size 653.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM17.5_G
# 11047
Datast ID D4AN_TM17.5_G
Dataset Kind Quantitative data
Dataset Size 515.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_TM17.5_L
# 11048
Datast ID D4AN_TM17.5_L
Dataset Kind Quantitative data
Dataset Size 522.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset D4AN_woTM_G
# 11049
Datast ID D4AN_woTM_G
Dataset Kind Quantitative data
Dataset Size 683.2 MB
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Thumbnail Thumbnail for dataset D4AN_woTM_L
# 11050
Datast ID D4AN_woTM_L
Dataset Kind Quantitative data
Dataset Size 661.0 MB
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Thumbnail Thumbnail for dataset G1CN_TM9.5_G
# 11051
Datast ID G1CN_TM9.5_G
Dataset Kind Quantitative data
Dataset Size 710.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset G1CN_TM9.5_L
# 11052
Datast ID G1CN_TM9.5_L
Dataset Kind Quantitative data
Dataset Size 640.2 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset G1CN_TM10.5_G
# 11053
Datast ID G1CN_TM10.5_G
Dataset Kind Quantitative data
Dataset Size 715.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset G1CN_TM10.5_L
# 11054
Datast ID G1CN_TM10.5_L
Dataset Kind Quantitative data
Dataset Size 712.4 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset G1CN_TM11.5_G
# 11055
Datast ID G1CN_TM11.5_G
Dataset Kind Quantitative data
Dataset Size 549.0 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset G1CN_TM11.5_L
# 11056
Datast ID G1CN_TM11.5_L
Dataset Kind Quantitative data
Dataset Size 559.7 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset G1CN_TM12.5_G
# 11057
Datast ID G1CN_TM12.5_G
Dataset Kind Quantitative data
Dataset Size 556.0 MB
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Thumbnail Thumbnail for dataset G1CN_TM12.5_L
# 11058
Datast ID G1CN_TM12.5_L
Dataset Kind Quantitative data
Dataset Size 550.9 MB
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SSBD:OMERO
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