Summary of 293-Kimata-PlantInhibit


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Title
Novel inhibitors of microtubule organization and phragmoplast formation in diverse plant species
Description
-
Release date
2024-12-14
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
24 ( Image datasets: 24, Quantitative data datasets: 0 )
Size of Datasets
13.4 GB ( Image datasets: 13.4 GB, Quantitative data datasets: 0 bytes )

Organism(s)
Arabidopsis thaliana, Nicotiana tabacum, Physcomitrium patens

Datatype
-
Molecular Function (MF)
Biological Process (BP)
cytoskeleton organization, cell division
Cellular Component (CC)
plasma membrane, phragmoplast, cytoskeleton, nucleus
Biological Imaging Method
confocal microscopy, two-photon laser scanning microscopy, time lapse microscopy
X scale
0.205 micrometer/pixel, 0.142 micrometer/pixel, 1.32 micrometer/pixel, 0.138 micrometer/pixel, 0.134 micrometer/pixel, 0.417 micrometer/pixel, 1.67 micrometer/pixel
Y scale
0.205 micrometer/pixel, 0.142 micrometer/pixel, 1.32 micrometer/pixel, 0.138 micrometer/pixel, 0.134 micrometer/pixel, 0.417 micrometer/pixel, 1.67 micrometer/pixel
Z scale
1 micrometer/slice, 10 micrometer/slice, NA, 5 micrometer/slice
T scale
5 minutes per time interval, 20 minutes per time interval, 10 minutes per time interval, 30 seconds per time interval, 3 minutes per time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Yusuke Kimata, Moe Yamada, Takashi Murata, Keiko Kuwata, Ayato Sato, Takamasa Suzuki, Daisuke Kurihara, Mitsuyasu Hasebe, Tetsuya Higashiyama, Minako Ueda (2023) Novel inhibitors of microtubule organization and phragmoplast formation in diverse plant species., Life science alliance, Volume 6, Number 5

Published in 2023 May (Electronic publication in Feb. 27, 2023, midnight )

(Abstract) Cell division is essential for development and involves spindle assembly, chromosome separation, and cytokinesis. In plants, the genetic tools for controlling the events in cell division at the desired time are limited and ineffective owing to high redundancy and lethality. Therefore, we screened cell division-affecting compounds in Arabidopsis thaliana zygotes, whose cell division is traceable without time-lapse observations. We then determined the target events of the identified compounds using live-cell imaging of tobacco BY-2 cells. Subsequently, we isolated two compounds, PD-180970 and PP2, neither of which caused lethal damage. PD-180970 disrupted microtubule (MT) organization and, thus, nuclear separation, and PP2 blocked phragmoplast formation and impaired cytokinesis. Phosphoproteomic analysis showed that these compounds reduced the phosphorylation of diverse proteins, including MT-associated proteins (MAP70) and class II Kinesin-12. Moreover, these compounds were effective in multiple plant species, such as cucumber (Cucumis sativus) and moss (Physcomitrium patens). These properties make PD-180970 and PP2 useful tools for transiently controlling plant cell division at key manipulation nodes conserved across diverse plant species.

Contact
Minako Ueda , Tohoku University , Graduate School of Life Sciences
Contributors
Yusuke Kimata, Moe Yamada, Takashi Murata

Dataset List of 293-Kimata-PlantInhibit

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#
Dataset ID
Kind
Size
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Thumbnail Thumbnail for dataset Fig1D_CellDiv_DMSO
# 11782
Datast ID Fig1D_CellDiv_DMSO
Dataset Kind Image data
Dataset Size 1.1 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1E_CellDiv_Oryzalin
# 11783
Dataset Kind Image data
Dataset Size 1.1 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1F_CellDiv_PD-180970
# 11784
Dataset Kind Image data
Dataset Size 1.1 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1G_CellDiv_PP2
# 11785
Datast ID Fig1G_CellDiv_PP2
Dataset Kind Image data
Dataset Size 1.1 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1H_MT_DMSO
# 11786
Datast ID Fig1H_MT_DMSO
Dataset Kind Image data
Dataset Size 349.0 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1I_MT_Oryzalin
# 11787
Datast ID Fig1I_MT_Oryzalin
Dataset Kind Image data
Dataset Size 341.2 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1J_MT_PD-180970
# 11788
Datast ID Fig1J_MT_PD-180970
Dataset Kind Image data
Dataset Size 349.0 MB
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Thumbnail Thumbnail for dataset Fig1K_MT_PP2
# 11789
Datast ID Fig1K_MT_PP2
Dataset Kind Image data
Dataset Size 341.3 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1B_DMSO
# 11790
Datast ID FigS1B_DMSO
Dataset Kind Image data
Dataset Size 1.5 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1B_Oryzalin
# 11791
Datast ID FigS1B_Oryzalin
Dataset Kind Image data
Dataset Size 1.5 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1B_PD180970
# 11792
Datast ID FigS1B_PD180970
Dataset Kind Image data
Dataset Size 1.5 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS1B_PP2
# 11793
Datast ID FigS1B_PP2
Dataset Kind Image data
Dataset Size 1.5 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3B_phragmoplast_none
# 11794
Dataset Kind Image data
Dataset Size 87.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig3C_phragmoplast_PP2
# 11795
Dataset Kind Image data
Dataset Size 43.3 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Video5_phragmoplast_none
# 11796
Dataset Kind Image data
Dataset Size 64.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Video5_phragmoplast_PP2
# 11797
Dataset Kind Image data
Dataset Size 49.7 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS8A_none
# 11798
Datast ID FigS8A_none
Dataset Kind Image data
Dataset Size 13.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS8A_pp2
# 11799
Datast ID FigS8A_pp2
Dataset Kind Image data
Dataset Size 13.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS8B_none
# 11800
Datast ID FigS8B_none
Dataset Kind Image data
Dataset Size 13.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS8B_pp2
# 11801
Datast ID FigS8B_pp2
Dataset Kind Image data
Dataset Size 13.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig4B_dmso
# 11802
Datast ID Fig4B_dmso
Dataset Kind Image data
Dataset Size 88.8 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig4B_pp2
# 11803
Datast ID Fig4B_pp2
Dataset Kind Image data
Dataset Size 78.8 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS9C_DMSO
# 11804
Datast ID FigS9C_DMSO
Dataset Kind Image data
Dataset Size 800.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS9C_PP2
# 11805
Datast ID FigS9C_PP2
Dataset Kind Image data
Dataset Size 800.1 MB
4D view
SSBD:OMERO
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