Summary of 269-Wang-CellPhysicalDyn


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Title
HS-SICM images or time-lapse images of the cell surface of the cells of the indicated genotype and normal crypt cells.
Description
-
Release date
2023-07-20
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
33 ( Image datasets: 33, Quantitative data datasets: 0 )
Size of Datasets
227.1 MB ( Image datasets: 227.1 MB, Quantitative data datasets: 0 bytes )

Organism(s)
Homo sapiens, Mus musculus
Strain(s)
C57BL/6

Datatype
-
Molecular Function (MF)
Biological Process (BP)
Cellular Component (CC)
cell surface
Biological Imaging Method
time lapse microscopy, high-speed (HS)-scanning ion conductance microscopy
X scale
0.35277806 millimeter/pixel, 2 micrometer/pixel
Y scale
0.35277806 millimeter/pixel, 2 micrometer/pixel
Z scale
-
T scale
22.1 second/minuter of time interval, 18.3 second/minuter of time interval, 26.1 second/minuter of time interval, 18.7 second/minuter of time interval, 23.4 second/minuter of time interval, NA, 17.0 second/minuter of time interval, 22.0 second/minuter of time interval, 28.8 second/minuter of time interval, 25.8 second/minuter of time interval, 23.3 second/minuter of time interval, 22.5 second/minuter of time interval, 20.4 second/minuter of time interval, 19.2 second/minuter of time interval, 19.5 second/minuter of time interval, 21.2 second/minuter of time interval, 21.1 second/minuter of time interval, 30.2 second/minuter of time interval, 18.1 second/minuter of time interval, 26.0 second/minuter of time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Dong Wang, Linhao Sun, Satoru Okuda, Daisuke Yamamoto, Mizuho Nakayama, Hiroko Oshima, Hideyuki Saito, Yuta Kouyama, Koshi Mimori, Toshio Ando, Shinji Watanabe, Masanobu Oshima (2022) Nano-scale physical properties characteristic to metastatic intestinal cancer cells identified by high-speed scanning ion conductance microscope., Biomaterials, Volume 280, pp. 121256

Published in 2022 Jan (Electronic publication in Nov. 13, 2021, midnight )

(Abstract) Recent genetic studies have indicated relationships between gene mutations and colon cancer phenotypes. However, how physical properties of tumor cells are changed by genetic alterations has not been elucidated. We examined genotype-defined mouse intestinal tumor-derived cells using a high-speed scanning ion conductance microscope (HS-SICM) that can obtain high-resolution live images of nano-scale topography and stiffness. The tumor cells used in this study carried mutations in Apc (A), Kras (K), Tgfbr2 (T), Trp53 (P), and Fbxw7 (F) in various combinations. Notably, high-metastatic cancer-derived cells carrying AKT mutations (AKT, AKTP, and AKTPF) showed specific ridge-like morphology with active membrane volume change, which was not found in low-metastatic and adenoma-derived cells. Furthermore, the membrane was significantly softer in the metastatic AKT-type cancer cells than other genotype cells. Importantly, a principal component analysis using RNAseq data showed similar distributions of expression profiles and physical properties, indicating a link between genetic alterations and physical properties. Finally, the malignant cell-specific physical properties were confirmed by an HS-SICM using human colon cancer-derived cells. These results indicate that the HS-SICM analysis is useful as a novel diagnostic strategy for predicting the metastatic ability of cancer cells.
(MeSH Terms)

Contact
Masanobu Oshima , Kanazawa University , Cancer Research Institute , WPI Nano-Life Science Institute
Contributors

Dataset List of 269-Wang-CellPhysicalDyn

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#
Dataset ID
Kind
Size
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Thumbnail Thumbnail for dataset Fig1C_organoid_A
# 10719
Datast ID Fig1C_organoid_A
Dataset Kind Image data
Dataset Size 469.3 KB
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Thumbnail Thumbnail for dataset Fig1C_organoid_AK
# 10720
Datast ID Fig1C_organoid_AK
Dataset Kind Image data
Dataset Size 469.3 KB
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Thumbnail Thumbnail for dataset Fig1C_organoid_AKF
# 10721
Datast ID Fig1C_organoid_AKF
Dataset Kind Image data
Dataset Size 469.3 KB
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Thumbnail Thumbnail for dataset Fig1C_organoid_AKP
# 10722
Datast ID Fig1C_organoid_AKP
Dataset Kind Image data
Dataset Size 469.3 KB
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Thumbnail Thumbnail for dataset Fig1C_organoid_AKT
# 10723
Datast ID Fig1C_organoid_AKT
Dataset Kind Image data
Dataset Size 469.3 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1C_organoid_AKTP
# 10724
Dataset Kind Image data
Dataset Size 469.3 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1C_organoid_AKTPF
# 10725
Dataset Kind Image data
Dataset Size 469.3 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1C_organoid_crypt
# 10726
Dataset Kind Image data
Dataset Size 469.3 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS4A_HS-SICM_AKTPF
# 10727
Dataset Kind Image data
Dataset Size 2.2 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS4A_HS-SICM_AKTPF_EnlargedRegion1
# 10728
Dataset Kind Image data
Dataset Size 2.1 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset FigS4A_HS-SICM_AKTPF_EnlargedRegion2
# 10729
Dataset Kind Image data
Dataset Size 2.3 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset VideoS1_LiveCell_A
# 10730
Datast ID VideoS1_LiveCell_A
Dataset Kind Image data
Dataset Size 10.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset VideoS1_LiveCell_AK
# 10731
Dataset Kind Image data
Dataset Size 14.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset VideoS1_LiveCell_AKF
# 10732
Dataset Kind Image data
Dataset Size 10.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset VideoS1_LiveCell_AKP
# 10733
Dataset Kind Image data
Dataset Size 13.3 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset VideoS1_LiveCell_AKT
# 10734
Dataset Kind Image data
Dataset Size 11.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset VideoS1_LiveCell_AKTP
# 10735
Dataset Kind Image data
Dataset Size 10.1 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset VideoS1_LiveCell_AKTPF
# 10736
Dataset Kind Image data
Dataset Size 10.1 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset VideoS1_LiveCell_crypt
# 10737
Dataset Kind Image data
Dataset Size 13.3 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset VideoS1_parafomaldehyde_A
# 10738
Dataset Kind Image data
Dataset Size 8.3 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset VideoS1_parafomaldehyde_AK
# 10739
Dataset Kind Image data
Dataset Size 4.1 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset VideoS1_parafomaldehyde_AKF
# 10740
Dataset Kind Image data
Dataset Size 6.4 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset VideoS1_parafomaldehyde_AKP
# 10741
Dataset Kind Image data
Dataset Size 4.1 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset VideoS1_parafomaldehyde_AKT
# 10742
Dataset Kind Image data
Dataset Size 12.4 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset VideoS1_parafomaldehyde_AKTP
# 10743
Dataset Kind Image data
Dataset Size 6.4 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset VideoS1_parafomaldehyde_AKTPF
# 10744
Dataset Kind Image data
Dataset Size 4.6 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset VideoS1_parafomaldehyde_crypt
# 10745
Dataset Kind Image data
Dataset Size 4.6 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset VideoS4_topography_C3-CTRL
# 10746
Dataset Kind Image data
Dataset Size 5.5 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset VideoS4_topography_C3-TGFB
# 10747
Dataset Kind Image data
Dataset Size 16.5 MB
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Thumbnail Thumbnail for dataset VideoS4_topography_C14-CTRL
# 10748
Dataset Kind Image data
Dataset Size 9.6 MB
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Thumbnail Thumbnail for dataset VideoS4_topography_C14-TGFB
# 10749
Dataset Kind Image data
Dataset Size 9.2 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset VideoS4_topography_C45-CTRL
# 10750
Dataset Kind Image data
Dataset Size 13.8 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset VideoS4_topography_C45-TGFB
# 10751
Dataset Kind Image data
Dataset Size 17.9 MB
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