Summary of 228-Kanadome-CellInteration

SSBD:database
SSBD:database URL
Title
Time-lapse images of FRET‐based indicators dynamics in HEK293T cells or K562 cells.
Description
-
Relase date
2022-11-23
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
8 ( Image datasets: 8, Quantitative data datasets: 0 )
Size of Datasets
1.1 GB ( Image datasets: 1.1 GB, Quantitative data datasets: 0 bytes )

Organism(s)
Homo sapiens
Cell lines(s)
HEK293T, K562 cell, K562 cell

Datatype
-
Molecular Function (MF)
Biological Process (BP)
homophilic cell adhesion via plasma membrane adhesion molecules
Cellular Component (CC)
Biological Imaging Method
time lapse microscopy, FRET
X scale
0.138 micrometer/pixel, NA, 0.0878588 micrometer/pixel
Y scale
0.138 micrometer/pixel, NA, 0.0878588 micrometer/pixel
Z scale
-
T scale
-

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Takashi Kanadome, Natsumi Hoshino, Takeharu Nagai, Tomoki Matsuda, Takeshi Yagi (2021) Development of FRET-based indicators for visualizing homophilic trans interaction of a clustered protocadherin., Scientific reports, Volume 11, Number 1, pp. 22237

Published in 2021 Nov 15 (Electronic publication in Nov. 15, 2021, midnight )

(Abstract) Clustered protocadherins (Pcdhs), which are cell adhesion molecules, play a fundamental role in self-recognition and non-self-discrimination by conferring diversity on the cell surface. Although systematic cell-based aggregation assays provide information regarding the binding properties of Pcdhs, direct visualization of Pcdh trans interactions across cells remains challenging. Here, we present Forster resonance energy transfer (FRET)-based indicators for directly visualizing Pcdh trans interactions. We developed the indicators by individually inserting FRET donor and acceptor fluorescent proteins (FPs) into the ectodomain of Pcdh molecules. They enabled successful visualization of specific trans interactions of Pcdh and revealed that the Pcdh trans interaction is highly sensitive to changes in extracellular Ca(2+) levels. We expect that FRET-based indicators for visualizing Pcdh trans interactions will provide a new approach for investigating the roles of Pcdh in self-recognition and non-self-discrimination processes.
(MeSH Terms)

Contact
Tomoki Matsuda, Takeshi Yagi , Osaka University, Osaka University , Department of Biomolecular Science and Engineering , Graduate School of Frontier Biosciences , Laboratories for Integrated Biology,
Contributors


Dataset List of 228-Kanadome-CellInteration

#
Dataset ID
Kind
Size
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SSBD:OMERO
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# 8718
Dataset Kind Image data
Dataset Size 148.7 MB
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SSBD:OMERO
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# 8719
Dataset Kind Image data
Dataset Size 152.5 MB
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SSBD:OMERO
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# 8720
Datast ID Figure3d_gB2-gB2
Dataset Kind Image data
Dataset Size 108.9 MB
4D view
SSBD:OMERO
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# 8721
Dataset Kind Image data
Dataset Size 98.0 MB
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SSBD:OMERO
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# 8722
Dataset Kind Image data
Dataset Size 103.5 MB
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SSBD:OMERO
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# 8723
Dataset Kind Image data
Dataset Size 108.9 MB
4D view
SSBD:OMERO
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# 8724
Dataset Kind Image data
Dataset Size 187.6 MB
4D view
SSBD:OMERO
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# 8725
Dataset Kind Image data
Dataset Size 262.4 MB
4D view
SSBD:OMERO
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