Summary of 188-Ipponjima-NHEKsCornification


SSBD:database
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Title
Images of morphological changes in granular cells during cornification.
Description
-
Release date
2022-03-31
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
21 ( Image datasets: 21, Quantitative data datasets: 0 )
Size of Datasets
265.3 GB ( Image datasets: 265.3 GB, Quantitative data datasets: 0 bytes )

Organism(s)
Homo sapiens
Reporter(s)
CTB, CTG, CYTO-ID, Hoechst 33258, LTR, MBG, MTR, TMRE

Datatype
-
Molecular Function (MF)
-
Biological Process (BP)
keratinocyte activation, mitochondrial depolarization
Cellular Component (CC)
NA, nucleus
Biological Imaging Method
two-photon laser scanning microscopy, time lapse microscopy
X scale
0.208 micrometer/pixel, 0.223 micrometer/pixel, 0.1563 micrometer/pixel
Y scale
0.208 micrometer/pixel, 0.223 micrometer/pixel, 0.1563 micrometer/pixel
Z scale
0.6 micrometer/slice, 0.5 micrometer/slice
T scale
4 hour for time interval, 180 second for each time interval, 90 second for each time interval, NA, 120 second for each time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Sari Ipponjima, Yuki Umino, Masaharu Nagayama, Mitsuhiro Denda (2020) Live imaging of alterations in cellular morphology and organelles during cornification using an epidermal equivalent model., Scientific reports, Volume 10, Number 1, pp. 5515

Published in 2020 Mar 26 (Electronic publication in March 26, 2020, midnight )

(Abstract) The stratum corneum plays a crucial role in epidermal barrier function. Various changes occur in granular cells at the uppermost stratum granulosum during cornification. To understand the temporal details of this process, we visualized the cell shape and organelles of cornifying keratinocytes in a living human epidermal equivalent model. Three-dimensional time-lapse imaging with a two-photon microscope revealed that the granular cells did not simply flatten but first temporarily expanded in thickness just before flattening during cornification. Moreover, before expansion, intracellular vesicles abruptly stopped moving, and mitochondria were depolarized. When mitochondrial morphology and quantity were assessed, granular cells with fewer, mostly punctate mitochondria tended to transition to corneocytes. Several minutes after flattening, DNA leakage from the nucleus was visualized. We also observed extension of the cell-flattening time induced by the suppression of filaggrin expression. Overall, we successfully visualized the time-course of cornification, which describes temporal relationships between alterations in the transition from granular cells to corneocytes.
(MeSH Terms)

Contact
Sari Ipponjima , Hokkaido University , Research Center of Mathematics for Social Creativity, Research Institute for Electronic Science
Contributors

Dataset List of 188-Ipponjima-NHEKsCornification

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#
Dataset ID
Kind
Size
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Thumbnail Thumbnail for dataset Figure1ab_epithelium_morphology
# 7381
Dataset Kind Image data
Dataset Size 424.7 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure1cdef_timelapse_granular
# 7382
Dataset Kind Image data
Dataset Size 25.5 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure1gh_z_direction
# 7383
Dataset Kind Image data
Dataset Size 30.2 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure2abc_epithelium_morphology
# 7384
Dataset Kind Image data
Dataset Size 528.6 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure2defg_timelapse_granular
# 7385
Dataset Kind Image data
Dataset Size 49.1 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure3b_mitochondrial_0-4h
# 7386
Dataset Kind Image data
Dataset Size 6.2 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure3b_mitochondrial_4h
# 7387
Dataset Kind Image data
Dataset Size 5.9 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure4a_timelapse_TMRE_disappear
# 7388
Dataset Kind Image data
Dataset Size 34.1 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure4b_timelapse_MTR_decrease
# 7389
Dataset Kind Image data
Dataset Size 38.7 GB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure4cde_timelapse_mitochondrial_disappear
# 7390
Dataset Kind Image data
Dataset Size 17.4 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS5_timelapse_control
# 7391
Dataset Kind Image data
Dataset Size 28.7 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS5_timelapse_FLG-KD
# 7392
Dataset Kind Image data
Dataset Size 28.2 GB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS7_MBG_5min
# 7393
Datast ID FigureS7_MBG_5min
Dataset Kind Image data
Dataset Size 50.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS7_MBG_30min
# 7394
Datast ID FigureS7_MBG_30min
Dataset Kind Image data
Dataset Size 27.5 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS7_MBG_before
# 7395
Dataset Kind Image data
Dataset Size 21.4 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS7_MTR_5min
# 7396
Datast ID FigureS7_MTR_5min
Dataset Kind Image data
Dataset Size 16.4 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS7_MTR_30min
# 7397
Datast ID FigureS7_MTR_30min
Dataset Kind Image data
Dataset Size 16.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS7_MTR_before
# 7398
Dataset Kind Image data
Dataset Size 17.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS7_TMRE_5min
# 7399
Datast ID FigureS7_TMRE_5min
Dataset Kind Image data
Dataset Size 46.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS7_TMRE_30min
# 7400
Dataset Kind Image data
Dataset Size 43.9 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset FigureS7_TMRE_before
# 7401
Dataset Kind Image data
Dataset Size 30.4 MB
4D view
SSBD:OMERO
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