Summary of 185-Hoshino-MyotubeCa2Signal

SSBD:database
SSBD:database URL
Title
Images of EPS-induced Ca2+ signals in myotubes at 0, 5, 15, 30 and 60 min of 2 Hz or 20 Hz EPS.
Description
-
Relase date
2022-03-31
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
10 ( Image datasets: 10, Quantitative data datasets: 0 )
Size of Datasets
304.1 MB ( Image datasets: 304.1 MB, Quantitative data datasets: 0 bytes )

Organism(s)
Mus musculus
Cell lines(s)
C2C12

Datatype
-
Molecular Function (MF)
-
Biological Process (BP)
myotube differentiation, calcium signaling
Cellular Component (CC)
-
Biological Imaging Method
time lapse microscopy
X scale
1.3 micrometer/pixel
Y scale
1.3 micrometer/pixel
Z scale
-
T scale
-

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Daisuke Hoshino, Kentaro Kawata, Katsuyuki Kunida, Atsushi Hatano, Katsuyuki Yugi, Takumi Wada, Masashi Fujii, Takanori Sano, Yuki Ito, Yasuro Furuichi, Yasuko Manabe, Yutaka Suzuki, Nobuharu L Fujii, Tomoyoshi Soga, Shinya Kuroda (2020) Trans-omic Analysis Reveals ROS-Dependent Pentose Phosphate Pathway Activation after High-Frequency Electrical Stimulation in C2C12 Myotubes., iScience, Volume 23, Number 10, pp. 101558

Published in 2020 Oct 23 (Electronic publication in Sept. 12, 2020, midnight )

(Abstract) Skeletal muscle adaptation is mediated by cooperative regulation of metabolism, signal transduction, and gene expression. However, the global regulatory mechanism remains unclear. To address this issue, we performed electrical pulse stimulation (EPS) in differentiated C2C12 myotubes at low and high frequency, carried out metabolome and transcriptome analyses, and investigated phosphorylation status of signaling molecules. EPS triggered extensive and specific changes in metabolites, signaling phosphorylation, and gene expression during and after EPS in a frequency-dependent manner. We constructed trans-omic network by integrating these data and found selective activation of the pentose phosphate pathway including metabolites, upstream signaling molecules, and gene expression of metabolic enzymes after high-frequency EPS. We experimentally validated that activation of these molecules after high-frequency EPS was dependent on reactive oxygen species (ROS). Thus, the trans-omic analysis revealed ROS-dependent activation in signal transduction, metabolome, and transcriptome after high-frequency EPS in C2C12 myotubes, shedding light on possible mechanisms of muscle adaptation.

Contact
Shinya Kuroda , University of Tokyo , Department of Biological Sciences, Graduate School of Science
Contributors


Dataset List of 185-Hoshino-MyotubeCa2Signal

#
Dataset ID
Kind
Size
4D View
SSBD:OMERO
Download BDML
Download Images
# 7371
Dataset Kind Image data
Dataset Size 30.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7372
Dataset Kind Image data
Dataset Size 30.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7373
Dataset Kind Image data
Dataset Size 30.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7374
Dataset Kind Image data
Dataset Size 30.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7375
Dataset Kind Image data
Dataset Size 30.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7376
Dataset Kind Image data
Dataset Size 30.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7377
Dataset Kind Image data
Dataset Size 30.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7378
Dataset Kind Image data
Dataset Size 30.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7379
Dataset Kind Image data
Dataset Size 30.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data

# 7380
Dataset Kind Image data
Dataset Size 30.4 MB
4D view
SSBD:OMERO
Download BDML
Download Image data