Summary of 180-Watabe-Biosensoractivity


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Title
Imges of different biosensors activity expressed in HeLa cells, MDCK cells or mice ear skin.
Description
-
Release date
2022-03-31
Updated date
-
License
CC BY
Kind
Image data based on Experiment
Number of Datasets
115 ( Image datasets: 115, Quantitative data datasets: 0 )
Size of Datasets
3.9 GB ( Image datasets: 3.9 GB, Quantitative data datasets: 0 bytes )

Organism(s)
Homo sapiens, Canis lupus familiaris, Mus musculus
Cell lines(s)
MDCK cell, HeLa cell
Protein name(s)
ERK, JNK, PKA, ROCK, bPAC
Protein tag(s)
mCherry
Reporter(s)
AKAR3EV, Booster- PKA, Booster-ERK, Booster-JNK, Booster-PKA, Booster-ROCK2, EKAREV

Datatype
-
Molecular Function (MF)
extracellular signal-regulated kinase activity
Biological Process (BP)
-
Cellular Component (CC)
-
Biological Imaging Method
FRET, differences in fluorescence lifetime, time lapse microscopy, fluorescence microscopy
X scale
0.0176398 centimetre/pixel, 0.31 micrometer/pixel, 1.242 micrometer/pixel, 0.621 micrometer/pixel, NA, 0.994 micrometer/pixel
Y scale
0.0176398 centimetre/pixel, 0.31 micrometer/pixel, 1.242 micrometer/pixel, 0.621 micrometer/pixel, NA, 0.994 micrometer/pixel
Z scale
1 micrometer/slice, 6 micrometer/slice, NA, 3 micrometer/slice
T scale
62 sec per time interval, 124 sec per time interval, 58 sec per time interval, 60 sec per time interval, 120 sec per time interval, 125 sec per time interval, 1 sec per time interval, 59 sec per time interval, 57 sec per time interval, 1 min per time interval, 122 sec per time interval, 60.47 sec per time interval, NA, 142 sec per time interval

Image Acquisition
Experiment type
-
Microscope type
-
Acquisition mode
-
Contrast method
-
Microscope model
-
Detector model
-
Objective model
-
Filter set
-

Related paper(s)

Tetsuya Watabe, Kenta Terai, Kenta Sumiyama, Michiyuki Matsuda (2020) Booster, a Red-Shifted Genetically Encoded Forster Resonance Energy Transfer (FRET) Biosensor Compatible with Cyan Fluorescent Protein/Yellow Fluorescent Protein-Based FRET Biosensors and Blue Light-Responsive Optogenetic Tools., ACS sensors, Volume 5, Number 3, pp. 719-730

Published in 2020 Mar 27 (Electronic publication in Feb. 26, 2020, midnight )

(Abstract) Genetically encoded Forster resonance energy transfer (FRET)-based biosensors have been developed for the visualization of signaling molecule activities. Currently, most of them are comprised of cyan and yellow fluorescent proteins (CFP and YFP), precluding the use of multiple FRET biosensors within a single cell. Moreover, the FRET biosensors based on CFP and YFP are incompatible with the optogenetic tools that operate at blue light. To overcome these problems, here, we have developed FRET biosensors with red-shifted excitation and emission wavelengths. We chose mKOkappa and mKate2 as the favorable donor and acceptor pair by calculating the Forster distance. By optimizing the order of fluorescent proteins and modulatory domains of the FRET biosensors, we developed a FRET biosensor backbone named "Booster". The performance of the protein kinase A (PKA) biosensor based on the Booster backbone (Booster-PKA) was comparable to that of AKAR3EV, a previously developed FRET biosensor comprising CFP and YFP. For the proof of concept, we first showed simultaneous monitoring of activities of two protein kinases with Booster-PKA and ERK FRET biosensors based on CFP and YFP. Second, we showed monitoring of PKA activation by Beggiatoa photoactivated adenylyl cyclase, an optogenetic generator of cyclic AMP. Finally, we presented PKA activity in living tissues of transgenic mice expressing Booster-PKA. Collectively, the results demonstrate the effectiveness and versatility of Booster biosensors as an imaging tool in vitro and in vivo.
(MeSH Terms)

Contact
Kenta Terai , Graduate School of Medicine, Kyoto University , Department of Pathology and Biology of Diseases
Contributors

Dataset List of 180-Watabe-Biosensoractivity

Thumbnail
#
Dataset ID
Kind
Size
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Thumbnail Thumbnail for dataset Fig1B_No1_afterFSK
# 7211
Datast ID Fig1B_No1_afterFSK
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No1_beforeFSK
# 7212
Dataset Kind Image data
Dataset Size 73.4 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No2_afterFSK
# 7213
Datast ID Fig1B_No2_afterFSK
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No2_beforeFSK
# 7214
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No3_afterFSK
# 7215
Datast ID Fig1B_No3_afterFSK
Dataset Kind Image data
Dataset Size 73.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No3_beforeFSK
# 7216
Dataset Kind Image data
Dataset Size 73.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No4_afterFSK
# 7217
Datast ID Fig1B_No4_afterFSK
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No4_beforeFSK
# 7218
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No5_afterFSK
# 7219
Datast ID Fig1B_No5_afterFSK
Dataset Kind Image data
Dataset Size 73.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No5_beforeFSK
# 7220
Dataset Kind Image data
Dataset Size 73.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No6_afterFSK
# 7221
Datast ID Fig1B_No6_afterFSK
Dataset Kind Image data
Dataset Size 73.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No6_beforeFSK
# 7222
Dataset Kind Image data
Dataset Size 73.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No7_afterFSK
# 7223
Datast ID Fig1B_No7_afterFSK
Dataset Kind Image data
Dataset Size 73.5 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No7_beforeFSK
# 7224
Dataset Kind Image data
Dataset Size 73.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No8_afterFSK
# 7225
Datast ID Fig1B_No8_afterFSK
Dataset Kind Image data
Dataset Size 73.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No8_beforeFSK
# 7226
Dataset Kind Image data
Dataset Size 73.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No9_afterFSK
# 7227
Datast ID Fig1B_No9_afterFSK
Dataset Kind Image data
Dataset Size 73.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No9_beforeFSK
# 7228
Dataset Kind Image data
Dataset Size 73.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No10_afterFSK
# 7229
Dataset Kind Image data
Dataset Size 73.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No10_beforeFSK
# 7230
Dataset Kind Image data
Dataset Size 73.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No11_afterFSK
# 7231
Dataset Kind Image data
Dataset Size 73.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No11_beforeFSK
# 7232
Dataset Kind Image data
Dataset Size 73.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No12_afterFSK
# 7233
Dataset Kind Image data
Dataset Size 73.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No12_beforeFSK
# 7234
Dataset Kind Image data
Dataset Size 73.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No13_afterFSK
# 7235
Dataset Kind Image data
Dataset Size 73.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No13_beforeFSK
# 7236
Dataset Kind Image data
Dataset Size 73.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No14_afterFSK
# 7237
Dataset Kind Image data
Dataset Size 73.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No14_beforeFSK
# 7238
Dataset Kind Image data
Dataset Size 73.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No15_afterFSK
# 7239
Dataset Kind Image data
Dataset Size 73.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No15_beforeFSK
# 7240
Dataset Kind Image data
Dataset Size 73.2 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No16_afterFSK
# 7241
Dataset Kind Image data
Dataset Size 73.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig1B_No16_beforeFSK
# 7242
Dataset Kind Image data
Dataset Size 73.2 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2AB_HeLa_3559NES_AKAR3EV
# 7243
Dataset Kind Image data
Dataset Size 51.0 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2AB_HeLa_4493NES_BoosterPKA
# 7244
Dataset Kind Image data
Dataset Size 46.7 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Fig2AB_HeLa_4589NES_PKA_TAmutant
# 7245
Dataset Kind Image data
Dataset Size 51.2 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure3A_Booster_JNK
# 7246
Dataset Kind Image data
Dataset Size 46.7 KB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure3B_Booster_ROCK
# 7247
Dataset Kind Image data
Dataset Size 46.2 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure3C_Booster_ERK
# 7248
Dataset Kind Image data
Dataset Size 46.8 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure4C_HeLa_EKAREV_Booster-PKA
# 7249
Dataset Kind Image data
Dataset Size 50.3 KB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5A_FSK_HeLa_FSKtiteration1_thumb_w1CFP
# 7250
Dataset Kind Image data
Dataset Size 1.0 MB
4D view
SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5A_FSK_HeLa_FSKtiteration1_thumb_w2FRET
# 7251
Dataset Kind Image data
Dataset Size 1.0 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5A_FSK_HeLa_FSKtiteration1_thumb_w3mKO2
# 7252
Dataset Kind Image data
Dataset Size 1.0 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5A_FSK_HeLa_FSKtiteration1_thumb_w4mKate2-FRET
# 7253
Dataset Kind Image data
Dataset Size 1.0 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5A_FSK_HeLa_FSKtiteration1_thumb_w5DIC-fast
# 7254
Dataset Kind Image data
Dataset Size 1.0 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5A_FSK_HeLa_FSKtiteration1_w1CFP
# 7255
Dataset Kind Image data
Dataset Size 188.7 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5A_FSK_HeLa_FSKtiteration1_w2FRET
# 7256
Dataset Kind Image data
Dataset Size 188.7 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5A_FSK_HeLa_FSKtiteration1_w3mKO2
# 7257
Dataset Kind Image data
Dataset Size 188.7 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5A_FSK_HeLa_FSKtiteration1_w4mKate2-FRET
# 7258
Dataset Kind Image data
Dataset Size 188.7 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5A_FSK_HeLa_FSKtiteration1_w5DIC-fast
# 7259
Dataset Kind Image data
Dataset Size 188.7 MB
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SSBD:OMERO
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Thumbnail Thumbnail for dataset Figure5B_ISO_HeLa_Isotiteration_thumb_w1CFP
# 7260
Dataset Kind Image data
Dataset Size 794.5 KB
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SSBD:OMERO
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